Transcript Information: S_Transcript_192540.p1


Annotated TAIR IDATMG00750.1
Annotated Gene NameGAG/POL/ENV polyprotein
Annotated Gene Symbol(s)ORF119
Annotation TypeOrtholog
Chromosome PositionchrM:220830-221189 | Forward length=119
E-Value6E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4988931730159
Replicate 21.0904597137622
Replicate 31.3143099277968
Condition 2: 8 Hour
Replicate 12.5492420608987
Replicate 23.1629165318234
Replicate 32.3520935288255
Condition 3: 24 Hour
Replicate 12.2347064720263
Replicate 21.7974747112275
Replicate 31.9133964721123


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_192540.p1 GENE.S_Transcript_192540~~S_Transcript_192540.p1 ORF type:complete len:870 (+),score=100.17,RVT_1|PF00078.23|5.4e-23,rve|PF00665.22|8.1e+03,rve|PF00665.22|7.2e-21 S_Transcript_192540:2898-5507(+)
ATGCATCGCATTTTGTTAGAAGATGATCACAAAACTTCAATTGAGCCACAACGTAGGTTAAATCCCAATATGAAAGATGTGGTCAAGAAAGAAATTCTCAAACTACTAGATGCGGGAGTTATCTACCCTATCTCCGATAGTGAGTGGGTAAGCCCAGTCCAAGTAGTTCCTAAAAAGGGAGGTTTGACCGTTGTTAAAAATGAGAAAAATGAACTTATCCCAACAAGAACGGTTACCGGTTGGCGCATGTGTATTGATTACAGGAAGTTGAATAAAGCCACCCGAAAAGATCATTTTCCCCTACCCTTTATTGATCAAATGTTGGAACGGTTAGTTAGGCATTCATACTTTTGTTACTTAGATGGATTTTCCGGGTTTTTCCAAATCCCCATTCATCCTAGTGACCAAGAAAAAACGACATTCACATGCCCGTATGGTACATTTGCATTTAGAAGAATGCCGTTTGGCCTGTGTAATGCCCCCGCCACCTTCCAAAGATGCATGATGTCCATATTTTCTGATTTTATTGAGGAAATAATGGAAGTTTTTATGGATGATTTTTCTGTTTATGGCATCTCATTTGATCAATGTTTAAGAAATCTAACTAAAGTGCTGCAGAGATATGAAGAAGTGAATCTGGTTCTCAACTGGGAGAAATGTCACTTCATGGTCAAGGAGGGTATTGTTCTTGGGCACTTGGTGTCGGAAAAGGGAATCGAGGTTGATCGCGCCAAGGTTGAGATTATAGAGAAGATGCCTCCCCCTACATCTGTAAAGGGAGTGAGAAGTTTCCTAGGACATGCCGGGTTCTACCGGCGATTCATTAAAGATTTTTCGAAAATTGCGAAACCTCTTACTAACTTACTTGTGAAAGATGTGAATTTTGTCTTTGATGATGATTGTCTCAATGCCTTTTGTAGGTTGAAAGAAGCCTTGATTTCCGCACCCATCATACAACCACCGGATTGGAGCTTGCCATTTGAGGTGATGTGTGATGCAAGCGACTATGCTATTGGTGCGGTCTTGGGTCAAAGGAAGGACGGGAGAGTACATGCCATCTACTATGCAAGCCGGACCCTTGATGATGCGCAAAGGAATTATGCAACAACGGAAAAGGAGCTCTTGGCCGTAGTATTTGCCATGGACAAATTTCGATCCTACTTGATTGGGTCTAAAATCACCGTATTCACTGATCATGCGGCAATTAGATACCTATTGAGTAAGAAAGATGCCAAGCCAAGGTTAATAAGATGGATCCTACTTCTTCAAGAGTTTGATCTTGAAATCAAAGACAAAAAGGGCACCGAAAATGTGGTAGCGGATCATCTTTCCCGTTTAAGGCAAGAAATGGAAAATAGTGAATGTGATATTTTGTCAATCAATGAATCCTTCCCGGACGATCATCTATTTTCCGTTTCAAGCATGGATGCTCCATGGTATGCTGATTTTGTAAACTTCCTAGCTTGTGGAGTCCTACCACCGGACTTGACCTATCAACAAAAAAGGAAAATCTTTTCGGATGTAAAGTACTACTTTTGGGATGAACCTTTTCTTTTTAAAAGATGTGTTGATGGATTGCTTAGGAGGTGCATACCGGAAGATGAAGTTGAAAGCATTATCACCCATTGTCATTCATCTCCCTATGGAGGACATGCTAGCACTAATAAGACATCCACAAAAATCCTTCAAGCTGGTTTTTATTGGCCTTCATTGTTCAAGGATGTGAGAAAATTTGTTCTATCCTGTGATAAATGTCAAAGAGTTGGCAACATAACAAGAAGACATGAGATGCCACTCAACAACATCCTTGAGGTGGAGATTTTCGATGTTTGGGGGATTGATTTCATGGGCCCATTTCCATCATCTTGTGGCAACAAGTTCATCCTTGTGGCGGTGGATTACGTGTCGAAATGGGTTGAGGCTATTGCATCCCCAACAAATGACTCAAGGGTGGTGATTAAGCTATTCAAGAAAATCATATTTCCAAGATTTGGTGTCCCAAGGGCGGTTATTAGTGACGAAGGCACCCATTTCACCGAACGCCAATTTGAAGGCCTACTAAGCAAGTATGGTGTCACTCACAAAGTGGCCTCACCATATCATCCTCAAACCAATGGCCAAGTGGAAATATCAAATAGGGAGATAAAATCAATTCTTGAAAAGACGGTAGCCCGTTCAAGAAAGGATTGGTCTTTGAAACTAGATGATGCATTGTGGGCCTACCGCACCGCTTACAAGACCCCTATTGGTATGACCCCTTTTCGGTTAATATATGGGAAGCATTGTCATTTGCCCGTGGAGATTGAACACAAGGCTTATTGGGCCATCAAACTACTCAACTTCGATCTAAAGACCGCCGGTGAGAAAAGGAAATTGCAACTCAATGAACTTGATGAGTTGAGATTGGAGGCATATGATAATGCTAGAATGTACAAGGAGAGAACCAAGAGATGGCATGACCAACACATACTAAGGAGGGAGTTTCATGAAGGAGATTTAGTGCTTTTGTTCAATTCAAGGTTGAAACTCTTTCCGGGAAAGCTCCGCTCTAGATGGTCCGGGCCCTTTCAAGTGCGAAAAGTTTATCCATATGGAGCCGTGGACATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_192540.p1 GENE.S_Transcript_192540~~S_Transcript_192540.p1 ORF type:complete len:870 (+),score=100.17,RVT_1|PF00078.23|5.4e-23,rve|PF00665.22|8.1e+03,rve|PF00665.22|7.2e-21 S_Transcript_192540:2898-5507(+)
MHRILLEDDHKTSIEPQRRLNPNMKDVVKKEILKLLDAGVIYPISDSEWVSPVQVVPKKGGLTVVKNEKNELIPTRTVTGWRMCIDYRKLNKATRKDHFPLPFIDQMLERLVRHSYFCYLDGFSGFFQIPIHPSDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRCMMSIFSDFIEEIMEVFMDDFSVYGISFDQCLRNLTKVLQRYEEVNLVLNWEKCHFMVKEGIVLGHLVSEKGIEVDRAKVEIIEKMPPPTSVKGVRSFLGHAGFYRRFIKDFSKIAKPLTNLLVKDVNFVFDDDCLNAFCRLKEALISAPIIQPPDWSLPFEVMCDASDYAIGAVLGQRKDGRVHAIYYASRTLDDAQRNYATTEKELLAVVFAMDKFRSYLIGSKITVFTDHAAIRYLLSKKDAKPRLIRWILLLQEFDLEIKDKKGTENVVADHLSRLRQEMENSECDILSINESFPDDHLFSVSSMDAPWYADFVNFLACGVLPPDLTYQQKRKIFSDVKYYFWDEPFLFKRCVDGLLRRCIPEDEVESIITHCHSSPYGGHASTNKTSTKILQAGFYWPSLFKDVRKFVLSCDKCQRVGNITRRHEMPLNNILEVEIFDVWGIDFMGPFPSSCGNKFILVAVDYVSKWVEAIASPTNDSRVVIKLFKKIIFPRFGVPRAVISDEGTHFTERQFEGLLSKYGVTHKVASPYHPQTNGQVEISNREIKSILEKTVARSRKDWSLKLDDALWAYRTAYKTPIGMTPFRLIYGKHCHLPVEIEHKAYWAIKLLNFDLKTAGEKRKLQLNELDELRLEAYDNARMYKERTKRWHDQHILRREFHEGDLVLLFNSRLKLFPGKLRSRWSGPFQVRKVYPYGAVDI*

Click here to download the sequence:
Link to NCBI Protein BLAST