Transcript Information: S_Transcript_192715.p1


Annotated TAIR IDAT3G03000.1
Annotated Gene NameEF hand calcium-binding protein family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:677388-677885 | Forward length=165
E-Value2.3E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.129110071567
Replicate 215.243381876101
Replicate 312.965802337562
Condition 2: 8 Hour
Replicate 117.70653620271
Replicate 219.25334852631
Replicate 317.569425904712
Condition 3: 24 Hour
Replicate 113.239323327633
Replicate 217.306910658302
Replicate 314.368922267157


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_192715.p1 GENE.S_Transcript_192715~~S_Transcript_192715.p1 ORF type:complete len:165 (+),score=33.34,EF-hand_1|PF00036.28|3.4e-07,EF-hand_1|PF00036.28|9.1e-05,EF-hand_1|PF00036.28|1.6e-07,EF-hand_1|PF00036.28|1.4e-07,EF-hand_7|PF13499.2|6.7e-15,EF-hand_7|PF13499.2|2.1e-16,EF-hand_8|PF13833.2|0.0022,EF-hand_8|PF13833.2|2.6e-07,EF-hand_8|PF13833.2|0.0045,EF-hand_8|PF13833.2|1.7e-10,EF-hand_6|PF13405.2|2.7e-08,EF-hand_6|PF13405.2|0.2,EF-hand_6|PF13405.2|2.3e-07,EF-hand_6|PF13405.2|2.6e+03,EF-hand_6|PF13405.2|0.0035,EF-hand_5|PF13202.2|0.00019,EF-hand_5|PF13202.2|0.0024,EF-hand_5|PF13202.2|0.00011,EF-hand_5|PF13202.2|0.0064,EF-hand_4|PF12763.3|0.00021,EF-hand_4|PF12763.3|1.1e+02,EF-hand_4|PF12763.3|0.28,EF-hand_9|PF14658.2|8.8e-05,EF-hand_9|PF14658.2|0.33,SPARC_Ca_bdg|PF10591.5|0.0016,SPARC_Ca_bdg|PF10591.5|0.15 S_Transcript_192715:690-1184(+)
ATGAGTAGTGAAAAGGGGGCAGTGAAGCTGGACGATGATCAGATCGCAGAATTAAGGGAAATATTCCGAACATTTGATCGGAACAACGACGGAAAGCTAACCCAGCTAGAATTGGGCTCGCTTCTCCGATCATTGGGCCTAAAGCCCAGCGAAGATCAACTGGAGGCCCTAATTCACGCAGCTGATAAGAACAACAATGGTATGATTGAATTCTCAGAGTTCATAGCCTTGGTTGCTCCTGATCTCCTTCCTGCCAAATGCCCTTACACTGAAGACCAACTCAAACAGCTTTTCAAGATGTTTGATAGGGATGGTAACGGCTATATCACGGCTGCTGAGCTGGCACATTCTATGGCCAAACTTGGCCACGCCTTGACTGCTGAGGAGCTCACCGGTATGATCAAGGAGGCTGATACCGACGGCGATGGTTGCATCAATTTTCAAGAGTTCTCTCAGGCTATTACTTCTGCTGCCTTTGATAATTCCTGGACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_192715.p1 GENE.S_Transcript_192715~~S_Transcript_192715.p1 ORF type:complete len:165 (+),score=33.34,EF-hand_1|PF00036.28|3.4e-07,EF-hand_1|PF00036.28|9.1e-05,EF-hand_1|PF00036.28|1.6e-07,EF-hand_1|PF00036.28|1.4e-07,EF-hand_7|PF13499.2|6.7e-15,EF-hand_7|PF13499.2|2.1e-16,EF-hand_8|PF13833.2|0.0022,EF-hand_8|PF13833.2|2.6e-07,EF-hand_8|PF13833.2|0.0045,EF-hand_8|PF13833.2|1.7e-10,EF-hand_6|PF13405.2|2.7e-08,EF-hand_6|PF13405.2|0.2,EF-hand_6|PF13405.2|2.3e-07,EF-hand_6|PF13405.2|2.6e+03,EF-hand_6|PF13405.2|0.0035,EF-hand_5|PF13202.2|0.00019,EF-hand_5|PF13202.2|0.0024,EF-hand_5|PF13202.2|0.00011,EF-hand_5|PF13202.2|0.0064,EF-hand_4|PF12763.3|0.00021,EF-hand_4|PF12763.3|1.1e+02,EF-hand_4|PF12763.3|0.28,EF-hand_9|PF14658.2|8.8e-05,EF-hand_9|PF14658.2|0.33,SPARC_Ca_bdg|PF10591.5|0.0016,SPARC_Ca_bdg|PF10591.5|0.15 S_Transcript_192715:690-1184(+)
MSSEKGAVKLDDDQIAELREIFRTFDRNNDGKLTQLELGSLLRSLGLKPSEDQLEALIHAADKNNNGMIEFSEFIALVAPDLLPAKCPYTEDQLKQLFKMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADTDGDGCINFQEFSQAITSAAFDNSWT*

Click here to download the sequence:
Link to NCBI Protein BLAST