Transcript Information: S_Transcript_19379.p1


Annotated TAIR IDAT1G18260.1
Annotated Gene NameHCP-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6279047-6282008 | Reverse length=678
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.588520061184
Replicate 240.128932405789
Replicate 341.638754662974
Condition 2: 8 Hour
Replicate 147.518874152905
Replicate 249.323501345612
Replicate 349.161439395288
Condition 3: 24 Hour
Replicate 137.705748823235
Replicate 236.615907657221
Replicate 340.377558569015


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_19379.p1 GENE.S_Transcript_19379~~S_Transcript_19379.p1 ORF type:complete len:679 (+),score=131.32,Sel1|PF08238.8|5.8,Sel1|PF08238.8|7.9e+03,Sel1|PF08238.8|3.1e-08,Sel1|PF08238.8|6.9e-06,Sel1|PF08238.8|4.2e-05,Sel1|PF08238.8|0.00018,Sel1|PF08238.8|4.5,Sel1|PF08238.8|44,Sel1|PF08238.8|0.45,Sel1|PF08238.8|7.5e-05,TPR_11|PF13414.2|36,TPR_11|PF13414.2|88,TPR_11|PF13414.2|75,TPR_11|PF13414.2|0.01,TPR_11|PF13414.2|67,TPR_11|PF13414.2|0.0025,TPR_11|PF13414.2|0.0087 S_Transcript_19379:168-2204(+)
ATGCGGCACCGCCGTATACTGGTCCACAAGTATTTGATCATCCTCATCACATTCTCTCTCCTACCACTCCATTCTCTCTCCCGCTCATTCGTCCTCGTTCTCTCTCAAGACGATCTACGAGACACCATCAACCCTAACCCCAACTCTCCCCCTTCCGAGGAACCAAATTCCGATTCTGAATCGTCCGAGTGGGACGAGTTCGGCGACGCCGATTCCAGGTTTGAAGAGGAACTTGACCCTGGATCATGGCGCCCCGTGTTCGAACCCGATGGAAATCGAAATCTGGAGGAAGAGTCGTTATATTATTCTGGAGTCCACAAGATGATTTCGGCAGCTAGTGCTGGAGAGCCGAGGCTTATGGAGGAAGCAGCGGTAGAGATCGAAGCAGCCGCCAAGGGAGGTGACTCTAATGCGAGGTCCGTGTTAGGGTTTTTGTACCAGATGGGGATTATGCGAGAAACCAATAAAGCTAAGGCCATTTTGTATCATCATTTTGCTGCCCAAGGTGGGAATTTGCAGTCTAAGATGGCTCTTGCTCATATTTATGCTAGACAAGATATGCATGAGAAAGCAGTTAAATTGTATAGTGAACTCGCTGAAGTTGCTGTAAATAGTTTCTTGATTTCTAAAGATTCACCTGTGATTGAGCCAGTAAGAATTCATGTCGGAGCTGAGGAAAATAAGGAAGCTTTGAGGAAGTCTCGAGGGGAAGATGATGAAGATTTTCAAATATTGGAGTACCAAGCACAAAAGGGCAATGCTGGGGCAATGTATAAGATTGGAATTTTCTATTATTTTGGACTCAGAGGGCTCCGACGTGATCCTTCCAAGGCATTGTCATGGTTCTTGAAAGCAGTCGAGAAAGGGGAGCCTAGGTCCATGGAGCTTCTAGGGGAGATATACGTGAGAGGTGCAGGAGTTGAGAGGAATTATACAAAAGCCCTTGAATGGCTTACTCTTGCAGCTAAACAACATCTGTACTCAGCTTATAATGGCATTGGATACTTATATGTTAAAGGCTATGGGGTTGAGAAAAAGAATCACACGAAAGCAAAGGAGTTTTTTGAAAAAGCTGCTGATAATGAGGACCCAGGTGGCTACTATAATCTTGGGGTCTTATATCTCAAAGGGATTGGAGTCAATAAGGATGTGAAGCTGGCTTGTAGATATTTTATATTGGCTTCTAATGCTGGTCAACCGAAGGCCTTCTATCAACTAGCAAAAATGTTTCACACTGGTGTTGGCCTGAAGAAGAATCTTCATATGGCCACTGCATTGTACAAACTAGTCGCAGAACGAGGACCATGGAATTCCTTGTCTAGGTGGGCATTAGAGGCCTACCTAAAGGGTGATGTAGGTAAAGCATTACTGTTGTATTCTAGGATGGCAGAACTGGGTTATGAGGTGGCACAAAGTAATGCTGCATGGATTCTTGATAAATATGGAGAGCGTAGTATGTGCATTGGAGCATCTGGGTTCTGTACAGATGTTGAGAGGCATCAAAGGGCACATTTATTATGGTGGCAGGCTTCTGAGCAGGGTAATGAGCACGCAGCTTTGTTGATAGGGGATGCATATTACTATGGAAGGGGTACTGACAGAGATTATGAACGTGCTGCTGAGGCATATATGCATGCAAAGTCACAGTCTAATGCTCAAGCCATGTTCAATCTTGGGTATATGCATGAACATGGACAAGGACTTCCTTTTGATCTTCATCTTGCTAAACGTTACTACGATCAAGCCCTGGAAATTGATCCAGCGGCAAAATTACCAGTCACCCTGGCACTTACAAGCCTATGGTTCCGGAAGAATTATGGGAACAGTTTTCTGGTACGCACAATTGATACTCTGCCAGAAGTTTATCCAAAAGTGGAAGCATGGGTGGAGAGTGTCATCATGGAGGAGGGAAATGCAACAATTCTTACCCTTTTTATTTGCCTTCTGACTGTCCTTTACCTTCGTGAGTGGCAACGTAGGCATGCTGTTCCTGCTCCAGCTGATGATGTCGCTGTACCACAACAGATCGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_19379.p1 GENE.S_Transcript_19379~~S_Transcript_19379.p1 ORF type:complete len:679 (+),score=131.32,Sel1|PF08238.8|5.8,Sel1|PF08238.8|7.9e+03,Sel1|PF08238.8|3.1e-08,Sel1|PF08238.8|6.9e-06,Sel1|PF08238.8|4.2e-05,Sel1|PF08238.8|0.00018,Sel1|PF08238.8|4.5,Sel1|PF08238.8|44,Sel1|PF08238.8|0.45,Sel1|PF08238.8|7.5e-05,TPR_11|PF13414.2|36,TPR_11|PF13414.2|88,TPR_11|PF13414.2|75,TPR_11|PF13414.2|0.01,TPR_11|PF13414.2|67,TPR_11|PF13414.2|0.0025,TPR_11|PF13414.2|0.0087 S_Transcript_19379:168-2204(+)
MRHRRILVHKYLIILITFSLLPLHSLSRSFVLVLSQDDLRDTINPNPNSPPSEEPNSDSESSEWDEFGDADSRFEEELDPGSWRPVFEPDGNRNLEEESLYYSGVHKMISAASAGEPRLMEEAAVEIEAAAKGGDSNARSVLGFLYQMGIMRETNKAKAILYHHFAAQGGNLQSKMALAHIYARQDMHEKAVKLYSELAEVAVNSFLISKDSPVIEPVRIHVGAEENKEALRKSRGEDDEDFQILEYQAQKGNAGAMYKIGIFYYFGLRGLRRDPSKALSWFLKAVEKGEPRSMELLGEIYVRGAGVERNYTKALEWLTLAAKQHLYSAYNGIGYLYVKGYGVEKKNHTKAKEFFEKAADNEDPGGYYNLGVLYLKGIGVNKDVKLACRYFILASNAGQPKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWNSLSRWALEAYLKGDVGKALLLYSRMAELGYEVAQSNAAWILDKYGERSMCIGASGFCTDVERHQRAHLLWWQASEQGNEHAALLIGDAYYYGRGTDRDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDPAAKLPVTLALTSLWFRKNYGNSFLVRTIDTLPEVYPKVEAWVESVIMEEGNATILTLFICLLTVLYLREWQRRHAVPAPADDVAVPQQIDE*

Click here to download the sequence:
Link to NCBI Protein BLAST