Transcript Information: S_Transcript_194476.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value2E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.41324536079473
Replicate 20.068517979992282
Replicate 30.2863778894969
Condition 2: 8 Hour
Replicate 11.1921025643118
Replicate 20.48634453564623
Replicate 31.1253708362878
Condition 3: 24 Hour
Replicate 10.61057127768742
Replicate 20.63346057200971
Replicate 30.5483053131547


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_194476.p1 GENE.S_Transcript_194476~~S_Transcript_194476.p1 ORF type:3prime_partial len:322 (+),score=28.66,SEO_N|PF14576.2|2.7e-42 S_Transcript_194476:77-1039(+)
ATGGAAGACTTGGATATTGATGACATACTACTAAAAACCCATCAAACACCCACTATCGCCGACGTGGACGTCAGTCTGATTTTCAACTTCGTCAAGAATGTCCTCCAACATCCTTTAAATTGTGAAGAAGAGGATATAGATACCAGGGAGATCAGGGAATCTGCTATCGAGGGGAATGAAATGCTGGAGAAATTAGCTCCTATCATATATAAGGTTTCGTCTAAGATATCTACAGACATTTCTCCGCCTAAGGACGACGCATATTGGAATATTTATGTTGAGAAATTAGAAGAGACAGCAATGTCAGTACTGAGAATGTTGTCCAACTACTCATGGGATGCAAAGATGATGATTACAGTTGCAGCCTTTGCATTAGTGTATTCAGAGTGTGGTCTGTTAGTTGAGTTGAATCAGCAGCAGCAGCAGCAGAATAATAACCAAAATCCTTTTGTCATTTCGGTGGCTGCCCTGAAGCGAATTCCAGACTTAACCAAGCACCCGCTTAACGCGAGGGATGAAGTCAAGAAATTTCTACGCAATCTCAGCCGAGCTATTGGCGTAATGTTGGATGTGGCCATCAAGATTATTGAAGTTACGAAACTGCCTCCTAAATACATCTCCACTGAACATCCACCTTTGTCCATTCTTATGAAACAAGTGATTCCTAGTGCTGTTCATGAAACTATCAGGGCTGCCGCATATTACGCGTGCGAAATAGCTTCGCCTAATGGAACAATTTTTAGAGATACGTATACTAACGGCCTTGGAATTCCGTGGCATATTATTTTCCGGGAATACCATGGCAAACTTATCGAAGGACTTGATGGCTGCTATAAGCATATAGAAAAAATGAAGTCTGAGGAGGCCTACCGTAATCTTATAAGTCTATTTGAAAAGACTCACACCGACAACACCAATGTTCTCAAGCATCTGATATACCTTGGGGAGGACATACTTCATCCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_194476.p1 GENE.S_Transcript_194476~~S_Transcript_194476.p1 ORF type:3prime_partial len:322 (+),score=28.66,SEO_N|PF14576.2|2.7e-42 S_Transcript_194476:77-1039(+)
MEDLDIDDILLKTHQTPTIADVDVSLIFNFVKNVLQHPLNCEEEDIDTREIRESAIEGNEMLEKLAPIIYKVSSKISTDISPPKDDAYWNIYVEKLEETAMSVLRMLSNYSWDAKMMITVAAFALVYSECGLLVELNQQQQQQNNNQNPFVISVAALKRIPDLTKHPLNARDEVKKFLRNLSRAIGVMLDVAIKIIEVTKLPPKYISTEHPPLSILMKQVIPSAVHETIRAAAYYACEIASPNGTIFRDTYTNGLGIPWHIIFREYHGKLIEGLDGCYKHIEKMKSEEAYRNLISLFEKTHTDNTNVLKHLIYLGEDILHP

Click here to download the sequence:
Link to NCBI Protein BLAST