Transcript Information: S_Transcript_194479.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value2E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.50852868602256
Replicate 20.70263661011194
Replicate 30.35240896975033
Condition 2: 8 Hour
Replicate 10.81498306944457
Replicate 20.42748755362535
Replicate 30.88250324479222
Condition 3: 24 Hour
Replicate 10.69569692645204
Replicate 20.43306646324231
Replicate 30.96389978618278


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_194479.p1 GENE.S_Transcript_194479~~S_Transcript_194479.p1 ORF type:3prime_partial len:314 (+),score=37.62,SEO_N|PF14576.2|1.6e-40 S_Transcript_194479:77-1015(+)
ATGGAAGACTTGGATATTGATGACATACTACTAAAAACCCATCAAACACCCACTATCGCCGACGTGGACGTCAGTCTGATTTTCAACTTCGTCAAGAATGTCCTCCAACATCCTTTAAATTGTGAAGAAGAGGATATAAATACCAGGGAGATCAGGGAAGCTGCTATCAAGGGGAATGAAATGCTGGAGAAATTAGCTCCTATCATACATAAGGTTTCGTCTAAGATATCTACAGACGTTCCTACGGCTACGGACAATGATGTTCCACATATTGAGAAAGTAAGACAGACAGCAATGTCAGTACTGAGAATGTTGTCCAACTACTCATGGGATGCAAAGGTGGTAATTACAATTGCAGCCTTTGCATTGGTGTATTCAGAGTTTGGTCTTTTAGTTCAGTTGAATCAGCAGCAGAAGCAGAAGAATAATAACCAAAATCCTTTTGTCATTTCGGTGGCTGTCCTGAAGCAAATTTCAGACTTAACCCACCCGTTTAACACGATCCATGGAGTCGAATTTCTAGGCTTTCTCAGTCAAGACATTGGAAGAATGTTGGATATGACCGTCAAGATTATTAAGGTTATGAAACTGCCTCCTAAGTACATCTCCACTGACCATCCACCTTTGTCTTCTCTTATGAAACAAGTGATTCCTAGACTTGTTCGGCACACTATCGAGGCTGCCTTATTTTACACGTGGGAAATAGCTTCGCCTAAAGGAACAATGTTGAGAGATATGAATTATCCCCGCTTTTGGATTTACAACTTGGTTTACAATGGCCAACTTATCAAAGCACTTGATGATTGCTATAAGCATATAGATAAAATGAAGTCTGAGGAGGCCTACAGTAATCTTTTAAGTATATTTGAAAAGACTCACACTGACAACACCAATGTTCTCAAGCATCTGATATACCTTGGGGAGGACATACTTCATCCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_194479.p1 GENE.S_Transcript_194479~~S_Transcript_194479.p1 ORF type:3prime_partial len:314 (+),score=37.62,SEO_N|PF14576.2|1.6e-40 S_Transcript_194479:77-1015(+)
MEDLDIDDILLKTHQTPTIADVDVSLIFNFVKNVLQHPLNCEEEDINTREIREAAIKGNEMLEKLAPIIHKVSSKISTDVPTATDNDVPHIEKVRQTAMSVLRMLSNYSWDAKVVITIAAFALVYSEFGLLVQLNQQQKQKNNNQNPFVISVAVLKQISDLTHPFNTIHGVEFLGFLSQDIGRMLDMTVKIIKVMKLPPKYISTDHPPLSSLMKQVIPRLVRHTIEAALFYTWEIASPKGTMLRDMNYPRFWIYNLVYNGQLIKALDDCYKHIDKMKSEEAYSNLLSIFEKTHTDNTNVLKHLIYLGEDILHP

Click here to download the sequence:
Link to NCBI Protein BLAST