Transcript Information: S_Transcript_194558.p1


Annotated TAIR IDAT5G48910.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)LPA66
Annotation TypeHomolog
Chromosome Positionchr5:19832969-19834909 | Reverse length=646
E-Value1E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0852868602256
Replicate 23.2321284065149
Replicate 32.7018021014192
Condition 2: 8 Hour
Replicate 14.0749153472229
Replicate 23.1349087265859
Replicate 32.5796248693926
Condition 3: 24 Hour
Replicate 14.1741815587123
Replicate 24.0419536569282
Replicate 32.409749465457


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_194558.p1 GENE.S_Transcript_194558~~S_Transcript_194558.p1 ORF type:5prime_partial len:157 (-),score=23.67,PPR|PF01535.16|8.3e-07,PPR|PF01535.16|1.1e+02 S_Transcript_194558:316-786(-)
CACCTCTCTCTCCCCCCCTCTCTCTCTCTCACATCTCACCGGCGGCGACTAGGAGCGGTGACTCAACGGCGGCGACCACCGGTTCCACCACCACCACGAGGGCACGAAGCATCCTTCTCTCACCACGTCAGGTACTTCTCTCTCCTCTCTCTCTGTTCTCTTTTCTATTCTCTCTCAATCTCGCTGTTCTCTTTCTCTCTCCTTGTCTCTCGACTCTCGGTCTTCTCTTTCTCTCTCCTTGCTGTTCTCTTACTCTCTCGGTCTCTCCTGGTGATGGATTTAGGGGAAATGGAGCTGTGGGTGTTGATGGGCTTAGGAAAAGGAGACAAGAAGATGTGGTTTTATTGGAATGTTATGGTTGATGGGTACTTGAAACTTGGAAACCTGAAAGCTGCACGTGAACTGTTTGATAAAATGCCCCAGAGAAGTGCTGTTTCTTGGAATGGAATGATAAATTTATTAATACTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_194558.p1 GENE.S_Transcript_194558~~S_Transcript_194558.p1 ORF type:5prime_partial len:157 (-),score=23.67,PPR|PF01535.16|8.3e-07,PPR|PF01535.16|1.1e+02 S_Transcript_194558:316-786(-)
HLSLPPSLSLTSHRRRLGAVTQRRRPPVPPPPRGHEASFSHHVRYFSLLSLCSLFYSLSISLFSFSLLVSRLSVFSFSLLAVLLLSRSLLVMDLGEMELWVLMGLGKGDKKMWFYWNVMVDGYLKLGNLKAARELFDKMPQRSAVSWNGMINLLIL*

Click here to download the sequence:
Link to NCBI Protein BLAST