Transcript Information: S_Transcript_194812.p1


Annotated TAIR IDATMG00310.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)ORF154
Annotation TypeOrtholog
Chromosome PositionchrM:90883-91347 | Reverse length=154
E-Value6E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.025834648193811
Replicate 30.021595709699767
Condition 2: 8 Hour
Replicate 10.099884732164557
Replicate 20
Replicate 30.02496000890513
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_194812.p1 GENE.S_Transcript_194812~~S_Transcript_194812.p1 ORF type:complete len:854 (-),score=128.81,RVT_1|PF00078.23|6.6e-45 S_Transcript_194812:431-2992(-)
ATGCTTAATATGAGGGACCTGGGATTCAAAGGGTATGAATTCACTTGGTGGAATGGGAGAGTCGGGGATAGGAAGGTAGAGGAGAGACTGGATCGCTTTCTAGCTAACTTGGAATGGTCGGTGGAATTCCCTATTGCAGAGGTGGTACATGTTGATGATTCTTCATCAGATCATCTCCCTATTATGGCGAATCTTAACCACAAAGGTGGGGGACACAAGAGGAGGAAGAACAAGCAATTCCGCTTTGAAAACATGTGGGTGCTGGAGGAGAGTTGTAGGGACATAGTGCGAGATGTATGGGGTAGTGCTAGTTTGCATGATGCAGGGGACATCTGGACTGCTCAGATGAGTAAATGTAAGGAGGCTCTTAGAAGGTGGAATGCGGAGGTTTTTGGCCATTTACAAACAAGAATCAAAAAGATCCAAAAGGAATTGAGTCTGGCAGGGAGCATGGAAGAACGTAAAGACCTGTTGATGGAGTTGCGTGATTTGCGTCGGAAAGAAGAAATGATGTGGTGGCAGAGGGCTAGAGTAGATTTTCTAAAATATGGGGATGCAAATACTACTTGGTTTCATGAAAAAGCAAACATGAGGAGAAAGAAGAATCTTATAACAAAGTTGACGCGTGCAAATGGAGAGGTGATGCATGATGAAGAAAAACTGCATGAGGTGGTCCTTGAGTATTTCGAAGATATTTTCAATTCAATTGATCCAAACAATGTTGACCGGCTCCTTAATTGTGTGCATCGCAAAGTCACAGCAGAGATGAATGAAGCTCTATGCAAACCTTATACTGCTGAAGAGATTCATGTTGCACTGAAGCAAATGCACCCTAGCAAAGCTCCTGGCCCTGACAGTATGAATGCTTTCTTTTTTCAACAATTTTGGCCCATCATTGGGGATTCTGTCACTGAGGTGGTTTTACGTGTCCTCAATGGTCTTGATTTTCCTCTTGATATTAATCACACAAATGTTGCTCTTATCCCAAAAAAGAAAAATCCTATTCTGGTTTCCGATTTTCGCCCTATTAGCCTTTGTAATGTGATTTTTAAAATTGCCACCAAAACTATTGCTAATAGGCTCAAAATCATCCTCCCTTCTATTATCTCGGAAAATCAGAGTGCTTTTACTCCTGGTAGAATGATAAGTGATAATATTATGATTTCTTTTGAAGTTTTTCATTCTATGAATTATCACACGGGGCTGAATGGAAGCATGGCTCTCAAATTAGACATGAGTAAAGCGTATGATAGGGTGGAGTGGGATTTCTTGGAGAAAATCATGCTTAATTTGGGTTTTAGAGACTCTTGGGTGAGAACAATCATGAAATGTGTCTCCACTGTTTCTTATTCCTTTTTAATAAATGGTGAACCAAAAGGAAATCTTAAACCTTCCAGAGGTCTTCGTCAGGGAGACCCTCTTTCCCCCTATCTTTTTTTGCTATGTGTTGAAGGTCTTTCGAGCTTGTTTTCCCACGCAGTGGCTGCAGGAGAGTTCCAAGGGCATACAATTTGTCAAGGTGCACCAATGGTGTCGCACTTACTGTTCGCTGATGATACAATCATATTTGCGAAGGCTAATGAAGACCATGCTCATAAGATCCTTGCCTTGTTAAACCAGTACAAAGAAGCCTCGGGGCAACAAATCAATATGGAAAAAACTACTGTCTCTTTCAGTAAAGGTGTGCCAAATGATTTGCGAAGAAGGGTGACCCAAATCCTTGGAGTAGTGGAGGTGATAAACCAAGATAAATATTTGGGTCTCCCAACCCATATTGGGAGATCAAAGAAAAAAGCTTTCCTACCACTACGGGATCGAGTTCAAAAGAAGCTTCAAGGGTGGATGGATAAATATCTCTCATGGTCGGGTAAGGAGGTTCTTATTAAGGCAGTAGCCCAAGCTATTCCTACCTATGCCATGAGTGTCTTCAAGTTCCCTGGTGATTTTTGTGAAGAAATCAATAGCCTTGTGAGGAAATTTTGGTGGGGGCATAAGGATGGTAAGCGCAAGATTCACTGGGTGAAGTGGGACAAACTTTGTGGCCCCAAAGATGATGGAGGGTTGGGGTTCCGAGACATTAACGCTTTCAATGATGCCCTTCTAGCGAAGCAACTATGGCGGTTGTTATGTGACCCCAACTCGCTTTGTGCCCGAGTTTTAAAAGCGAGATACTTTGCATCCAGTGATTTACTAAGGGCGGAGTTAGGGGCTCGGCCAAGCTATGTATGGAGGAGCCTCTGGGGAGCGCGAGAAACTTTGTTCAAGGGGCTACGATGGACTGTGGGCGATGGTGAATCCATTCGAGTTTGGGACGACCCTTGGCTGCCTAGGCCAACAACCTTTCGACCTATCACTCCGAGGGGTTTGAATGATCCAAACATGCGAGTTAGCTCCCTGATTAACAAAGACATGGGTACTTGGAATGAAAACAAGGTTAGAGACACTTTCCTTGATATTGATGCTGACGTAATATTAGATATTCCTGTTTGTATGCATTGGCCGTTGGACCGACTAAGCTGGCACTACACAACCACTCGCTTTGTGCCCTGTTGTTTGGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_194812.p1 GENE.S_Transcript_194812~~S_Transcript_194812.p1 ORF type:complete len:854 (-),score=128.81,RVT_1|PF00078.23|6.6e-45 S_Transcript_194812:431-2992(-)
MLNMRDLGFKGYEFTWWNGRVGDRKVEERLDRFLANLEWSVEFPIAEVVHVDDSSSDHLPIMANLNHKGGGHKRRKNKQFRFENMWVLEESCRDIVRDVWGSASLHDAGDIWTAQMSKCKEALRRWNAEVFGHLQTRIKKIQKELSLAGSMEERKDLLMELRDLRRKEEMMWWQRARVDFLKYGDANTTWFHEKANMRRKKNLITKLTRANGEVMHDEEKLHEVVLEYFEDIFNSIDPNNVDRLLNCVHRKVTAEMNEALCKPYTAEEIHVALKQMHPSKAPGPDSMNAFFFQQFWPIIGDSVTEVVLRVLNGLDFPLDINHTNVALIPKKKNPILVSDFRPISLCNVIFKIATKTIANRLKIILPSIISENQSAFTPGRMISDNIMISFEVFHSMNYHTGLNGSMALKLDMSKAYDRVEWDFLEKIMLNLGFRDSWVRTIMKCVSTVSYSFLINGEPKGNLKPSRGLRQGDPLSPYLFLLCVEGLSSLFSHAVAAGEFQGHTICQGAPMVSHLLFADDTIIFAKANEDHAHKILALLNQYKEASGQQINMEKTTVSFSKGVPNDLRRRVTQILGVVEVINQDKYLGLPTHIGRSKKKAFLPLRDRVQKKLQGWMDKYLSWSGKEVLIKAVAQAIPTYAMSVFKFPGDFCEEINSLVRKFWWGHKDGKRKIHWVKWDKLCGPKDDGGLGFRDINAFNDALLAKQLWRLLCDPNSLCARVLKARYFASSDLLRAELGARPSYVWRSLWGARETLFKGLRWTVGDGESIRVWDDPWLPRPTTFRPITPRGLNDPNMRVSSLINKDMGTWNENKVRDTFLDIDADVILDIPVCMHWPLDRLSWHYTTTRFVPCCLG*

Click here to download the sequence:
Link to NCBI Protein BLAST