Transcript Information: S_Transcript_195511.p1


Annotated TAIR IDAT5G48900.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19825240-19828909 | Forward length=417
E-Value9.9E-214
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0249022678942
Replicate 20.95925171989195
Replicate 30.80185809059133
Condition 2: 8 Hour
Replicate 11.3907863250304
Replicate 21.3982405399829
Replicate 32.6065574516961
Condition 3: 24 Hour
Replicate 10.41552767509282
Replicate 20.92379666751416
Replicate 30.47976714901036


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_195511.p1 GENE.S_Transcript_195511~~S_Transcript_195511.p1 ORF type:3prime_partial len:368 (+),score=56.80,Pec_lyase_C|PF00544.15|3.9e-19,Beta_helix|PF13229.2|3.5e-06 S_Transcript_195511:114-1214(+)
ATGGCGGAAATTCAATCGAAAGTTTTCTCTTTGACGATCACATTGTTGATTTCGATGCTTTTCATTGGGCTCGTTAATGGCAGATTACAGAGAGACGATGAAACCTTGAAATTGAGGATTGATGAGCAGGTTAAAAGCTTGAAGAACTCATCAATGGCGGACAGGGCGAACCAAACTGAATTGAGAAACGAACAAGATGCAATGGAGCAGCCCGAAGAAGTTGTCTCTATGGTTGAAAGGAGCATTAGCAACAGCACAGCAAGAAGAAACCTAGGCTATTTCTCATGTGGGACAGGCAACCCAATCGACGACTGCTGGAGGTGTGATCCTAACTGGCATAAAAACCGTAAGCGCCTTGCTGACTGTGCCATTGGCTTTGGTCGAAACGCTGTTGGTGGACGTGATGGACGGTTCTATGTGGTTACTGACCCTAGTGATGATGACGCGGTGAACCCCAAGCCTGGGACACTCCGCCATGCTGTCATCCAGGATGAGCCACTTTGGATCATCTTCAAGAGAGACATGGTGATCACCCTCAAGGAGGAGCTGATCATGAACAGCTTTAAGACCATTGATGGCAGAGGAGTGAATGTCCACATTGCCAATGGGGCTTGCGTTACTATCCAGTATATCACAAATGTGATCATTCATGGTATTCACATCCATGACTGTAAGCCAACTGGCAATGCCATGGTCAGAAGCTCCCCTTCTCATTATGGGTGGAGGACTATAGCTGATGGTGATGGGATTTCCATCTTTGGTGCAAGCCACATTTGGATTGACCACAATTCTCTCGCTAATTGTGCCGATGGGCTCATTGATGCTATCATGGCCTCCACAGCCATTACCATTTCTAACAACTACTTCACTCACCATAATGAGGTGATGTTGCTCGGTCACAGTGACTCGTACACAAAGGATAAGATAATGCAAGTAACCATTGCCTACAACCACTTTGGAGAGGGTCTGATTCAGAGGATGCCAAGGTGTAGGCATGGATACTTCCATGTTGTGAACAATGACTACACCCACTGGGAAATGTATGCTATTGGAGGCAGTGCAGAGCCCACCATTAACAGCCAGGGGAATAGATATCTCGCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_195511.p1 GENE.S_Transcript_195511~~S_Transcript_195511.p1 ORF type:3prime_partial len:368 (+),score=56.80,Pec_lyase_C|PF00544.15|3.9e-19,Beta_helix|PF13229.2|3.5e-06 S_Transcript_195511:114-1214(+)
MAEIQSKVFSLTITLLISMLFIGLVNGRLQRDDETLKLRIDEQVKSLKNSSMADRANQTELRNEQDAMEQPEEVVSMVERSISNSTARRNLGYFSCGTGNPIDDCWRCDPNWHKNRKRLADCAIGFGRNAVGGRDGRFYVVTDPSDDDAVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACVTIQYITNVIIHGIHIHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGASHIWIDHNSLANCADGLIDAIMASTAITISNNYFTHHNEVMLLGHSDSYTKDKIMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLA

Click here to download the sequence:
Link to NCBI Protein BLAST