Transcript Information: S_Transcript_19617.p1


Annotated TAIR IDAT5G21160.3
Annotated Gene NameLA RNA-binding protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:7198817-7203879 | Reverse length=833
E-Value4E-169
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.284169447142
Replicate 217.66883041487
Replicate 317.820852464343
Condition 2: 8 Hour
Replicate 130.426320852896
Replicate 228.383251593499
Replicate 329.559173285728
Condition 3: 24 Hour
Replicate 116.504511551903
Replicate 215.738094656283
Replicate 315.096018147635


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_19617.p1 GENE.S_Transcript_19617~~S_Transcript_19617.p1 ORF type:complete len:949 (+),score=239.88,La|PF05383.13|5.6e-23 S_Transcript_19617:816-3662(+)
ATGGCAATGGCAGAGAATGAGGGTAGTAGTGGGGATGAAAGAAAGGAGGTTGTTGATGGACCTGTTTCTGGGCCAAAGTCCCCTTGGAAAAGGCCTGTTGATAAGCCTGCTGATGCTCCTGTGATGGGGGCTGAAGCTTGGCCTGCACTTTCTGATGCTCAGAAACCCAAGAACTCTGAACCAGGTTCGAAACCGGGTTCCGATGGGCCTAATTCTGGCCCACACCACCAGCCAACTTCTGGTAATGACCAGGCATCTGCTGGGCCGCAAAAATATTCGAATTATTCACACAAACATGGGCAAAGTCGTCACCATAAAGCTGGATCAAAGCGCAACCAAAATGGTGCCCCCCCTTTTCCTCCTGTACCTTATTATCAGCCAGTGTTGCCTCATGTATTCCCTCCTGTGGTTCCTTCTCCTGTTTCGGTTCCTGCATATGGCTATCAGCCGTTTCCTCCTCCCCCTTTCTCTGGTGCCGAGAATCAAATGGCCAAAGCTGGCAATGAAACTCCCTTGCAAGCTTTTGGTCCACCACCTATCCATTCTGTTGATGGCAATAGAAATATCCAACCATCACCACGAGGAGATCCTGGTGTGAATGGTCCCAACCTCTCAAACAGAAGACCCAATGTCCCTGAAGCTGGTGGTCATCCATACACAGCATGGCATTATCCACGAGCATATGGCCCCAGAGACAGCATACTAAACCAAACTATGGCTAGGGCTTATGCACGACCTTCATTTTTTGGGCCAGCCCCACCGTTCGTAGGTGGACCAAGCTTCCCTGGCCCTGCACCAATGTATTACATTCATGCTGCACCTCCTGGTTCTATTAGGGCACCTTTCCCAGCACGCTTTGCTCCACATCCAATAAATACTATGGTCCCCATGCTACCACCAGAGTCATTAGTATTGATAGATAACATTGTGCAGCAGATTGAGTACTATTTCAGTGATGAGAATCTGCAGACTGATCATTACTTAATTTCTCAAATGGACGATCAAGGATGGGTTCCAATATCAATCATTGCTGATTTTAAAAGGGTTAAACGAATGAGTACAGACATACCTTTTATTCTGGATGCACTTCGGTATTCTTTGGCTGTTGAAGTGCAGGGTGACAAGGTTAGGAAACGTGTTAATTGGTTGAAGTATGTAGCAGCTTCTGCAGAGCATACATCTCCACAGAAAGCTCAGATAACCAAGGACCAAATTGCTGGCATAGCTTCTGGTGATATCAATAAAGATGGACTTGGTTACCAAAAAAAGGAGGATACTTCTGAAGCTGGCATCATTCAGTCATCAAATGTTGATAGTTTAGCAGAGACACCGGCAAAAAAAGATAACCTGGAAGCTAAAAATGATCCCAGTGCTTGTTCTAGCAGGGAGAAGGCTGTAAATGACAGTGAGAAACAAGCATCAGCCACTGAACAGGGATCTTCTCATGCTAGTCTTAATTCCCAATCAATCATTGATCATTCAGACCCTGATGTGAGAAATAAATCGCCAGTTCAGGTTCCATCTAAAACAGCTAAACCTACAACAATTATTGCTCATGAAAATAACATGGTTGGAGGGCCAACTGAGTTTGTTGCAAATCACGATGACCATTCAAATGATTTTTCCAGCACTTTTATGCTTGATGAAGAACTAGAACTGGAGCAGAAAATGACTAAAAGAGATGTCCACAATTCCTTTAGAAGGATTGAGGATGATGAGGATGAGATATTGGTAAATGATCAGGATGTTGAGAGACTGATGATCGTCACACAGAATAGCAGCAGTATCATTGGTGCCGGAACGAATATACAGCAGTCAGTAACCATCTCCAATGAGCTTGCATCTGCAATCAATGATGGCCTTTACTTTTATGAGCAGGAGCTCAAAGCAAAAAGATCTAACCGTAGGAAGAACAACAATATGAATGCTGAGAGCAAGGATGGGAACTCCAGATCATCAAACATTTCTACAGGTTTGTCCAACTCAAGGCCAGGTGAAAATTCTTCTGGAGGACATGCTCACGATGAGGCAGGCAATCCTAATAACAGAAGGAAGCACAGCAAAGGCTCTTCTAAGCAGCAATCAACCCACAAACAGCGTTTTTTTTCAAGCAATTTTAGGAACCATGGAGGTGGACGCAACTCGTTTGGAGTTATATCAGAAAGTCCTCCAAGTAATTCAGTTGGGTTCTTCTTCAGCTCTACGCCACCTGAGAATCATGGTCTCAGGTCTTCAAAATTGAGTGCTTCTCCTCATGGGAATGTTGCGGGCAGTAGTCCCCCAGTGGGCTCCTTGCCAAAGTCCTTTCCTCCATTTCAGCATCCAAGCCACCAATTACTAGAAGAAAATGGCTTCAAACAGCAGAAGTACCTGAAGTACCACAAGAAGTGTTTAAATGATAGGAAGAAGCTGGGAGTTGGTTGCAGTGAGGAAATGAATACCCTTTATAGATTTTGGTCTTATTTCCTTAGAGATGCATTTGTTCCTTCGATGTATGATGAGTTCCAGAAACTTGCTTTGGAGGACGCAGCGGCTAATTACAATTATGGACTGGAATGTTTATTCAGATTCTACAGCTATGGATTAGAGAAGGAATTCAGAGATGACCTATATGAGGATTTTGAGCAGCTCACTCTCGATACTTACAAGAAAGGCAATCTGTATGGTCTCGAAAAATACTGGGCGTTCCACCACTACCGGGAAGCACGTGACCACAAGGAGCCTTTGAAGAAGAATCCTGAGTTGGAGAAGATGCTGAGGGAGGAGTACCGTAGTTTAGAGGACTTCCGTGCCAAAGAGAAGTCTGCGGTGAAGGATGGCAATCCTCCTGGTCCTGCAGCGGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_19617.p1 GENE.S_Transcript_19617~~S_Transcript_19617.p1 ORF type:complete len:949 (+),score=239.88,La|PF05383.13|5.6e-23 S_Transcript_19617:816-3662(+)
MAMAENEGSSGDERKEVVDGPVSGPKSPWKRPVDKPADAPVMGAEAWPALSDAQKPKNSEPGSKPGSDGPNSGPHHQPTSGNDQASAGPQKYSNYSHKHGQSRHHKAGSKRNQNGAPPFPPVPYYQPVLPHVFPPVVPSPVSVPAYGYQPFPPPPFSGAENQMAKAGNETPLQAFGPPPIHSVDGNRNIQPSPRGDPGVNGPNLSNRRPNVPEAGGHPYTAWHYPRAYGPRDSILNQTMARAYARPSFFGPAPPFVGGPSFPGPAPMYYIHAAPPGSIRAPFPARFAPHPINTMVPMLPPESLVLIDNIVQQIEYYFSDENLQTDHYLISQMDDQGWVPISIIADFKRVKRMSTDIPFILDALRYSLAVEVQGDKVRKRVNWLKYVAASAEHTSPQKAQITKDQIAGIASGDINKDGLGYQKKEDTSEAGIIQSSNVDSLAETPAKKDNLEAKNDPSACSSREKAVNDSEKQASATEQGSSHASLNSQSIIDHSDPDVRNKSPVQVPSKTAKPTTIIAHENNMVGGPTEFVANHDDHSNDFSSTFMLDEELELEQKMTKRDVHNSFRRIEDDEDEILVNDQDVERLMIVTQNSSSIIGAGTNIQQSVTISNELASAINDGLYFYEQELKAKRSNRRKNNNMNAESKDGNSRSSNISTGLSNSRPGENSSGGHAHDEAGNPNNRRKHSKGSSKQQSTHKQRFFSSNFRNHGGGRNSFGVISESPPSNSVGFFFSSTPPENHGLRSSKLSASPHGNVAGSSPPVGSLPKSFPPFQHPSHQLLEENGFKQQKYLKYHKKCLNDRKKLGVGCSEEMNTLYRFWSYFLRDAFVPSMYDEFQKLALEDAAANYNYGLECLFRFYSYGLEKEFRDDLYEDFEQLTLDTYKKGNLYGLEKYWAFHHYREARDHKEPLKKNPELEKMLREEYRSLEDFRAKEKSAVKDGNPPGPAAA*

Click here to download the sequence:
Link to NCBI Protein BLAST