Transcript Information: S_Transcript_196891.p1


Annotated TAIR IDAT3G49660.1
Annotated Gene NameTransducin/WD40 repeat-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18413690-18415223 | Forward length=317
E-Value1.1E-176
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.869072089938
Replicate 220.761150055596
Replicate 321.054096944995
Condition 2: 8 Hour
Replicate 114.405647146382
Replicate 216.828381720148
Replicate 319.555246622859
Condition 3: 24 Hour
Replicate 115.723160978481
Replicate 219.855905717331
Replicate 317.558709379373


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_196891.p1 GENE.S_Transcript_196891~~S_Transcript_196891.p1 ORF type:complete len:339 (+),score=17.89,WD40|PF00400.28|2.9e-05,WD40|PF00400.28|1.5e-08,WD40|PF00400.28|3.1e-07,WD40|PF00400.28|7.4e-08,WD40|PF00400.28|0.0013,WD40|PF00400.28|2.5e-05,WD40|PF00400.28|9.4e-05,Nup160|PF11715.4|2.9e+02,Nup160|PF11715.4|0.15,Nup160|PF11715.4|0.02,Nup160|PF11715.4|4.7,Nup160|PF11715.4|0.056,WD40_like|PF17005.1|1.6e+02,WD40_like|PF17005.1|0.00024,WD40_like|PF17005.1|0.0017,WD40_like|PF17005.1|3.2,eIF2A|PF08662.7|1.5e+02,eIF2A|PF08662.7|0.00074,eIF2A|PF08662.7|0.67,eIF2A|PF08662.7|4.1,Ge1_WD40|PF16529.1|2.1,Ge1_WD40|PF16529.1|0.19,Ge1_WD40|PF16529.1|12,Ge1_WD40|PF16529.1|9.9e+02,Ge1_WD40|PF16529.1|4.5e+02,Nucleoporin_N|PF08801.7|96,Nucleoporin_N|PF08801.7|0.0083,Nucleoporin_N|PF08801.7|0.83,PALB2_WD40|PF16756.1|6.3,PALB2_WD40|PF16756.1|8.8,PALB2_WD40|PF16756.1|0.54,PALB2_WD40|PF16756.1|0.96 S_Transcript_196891:3-1019(+)
ATGGCTTCCACAACCCCAGAACCCCAACCCCCATTCACCCCTTACAAGCTCAAACAAACCCTACCCGCCCACAAACGGGCAATCTCCTCCGTAAAATTTTCCCCGGACGGCAAATACCTCGCCTCCGTCTCCGCCGATAAAACCGCCCGCATCTACTCCATCCCCCAATTCTCTCTCCTCCACGAACTCACCGGCCACGACCAAGGCATCTCCGACCTGGCCTTCTCCTCCGACACACGCCTTTTAGCCACCGCCTCCGACGACAAGTCCGTCAAAATCTGGGACGTCTCCACCGGTCACCTTATCAAAACCCTAATTGGCCACACCAACTATGTGTTCTGTGTCAATTTCAACCCCCAGTCTAATATGATCGTTTCGGGTTCGTTCGATGAGACTGTTAGGGTTTGGGATGTCAAGAGTGGGAAGTGCCTTAAGGTCCTCCCGGCCCATTCGGACCCTGTTACTGCTGTTAATTTTAATCGGGACGGGTCGTTGATCGTTTCAAGTAGCTATGATGGGTTGTGTCGGATTTGGGATGCTAATACTGGCCATTGTATGAAGACTTTGATTGATGATGAGAATCCTCCTGTTTCGTTTGTGAAGTTTTCACCTAATGGGAAGTTTATTCTTGTTGGGACATTGGATAATACTCTGAGGCTTTGGAATTTTTCTACTGGAAAGTTTCTGAAGACATATACTGGGCATGTAAATTCAAAATACTGCATTTCGACCACATTTTCCATAACAAATGGAAAGTACATCGTTAGTGGTTCCGAGGATAATTGCGTTTACTTGTGGGAGATTCAGTCAAGAAACATTGTCCAAAAATTGGAAGGTCATACTGATACCGTCATCTCAGTTGCTTGCCACCCCACTGAGAACATGATTGCATCCGGTGCCCTTGAGAATGACAAGACTATCAAGATATGGACACGAGAAAGACTAACTTGTTTCTTTGCTGGAGATTTTGGTATACTATCGCCCCTTATAAACATGAATGACAAGGACACTAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_196891.p1 GENE.S_Transcript_196891~~S_Transcript_196891.p1 ORF type:complete len:339 (+),score=17.89,WD40|PF00400.28|2.9e-05,WD40|PF00400.28|1.5e-08,WD40|PF00400.28|3.1e-07,WD40|PF00400.28|7.4e-08,WD40|PF00400.28|0.0013,WD40|PF00400.28|2.5e-05,WD40|PF00400.28|9.4e-05,Nup160|PF11715.4|2.9e+02,Nup160|PF11715.4|0.15,Nup160|PF11715.4|0.02,Nup160|PF11715.4|4.7,Nup160|PF11715.4|0.056,WD40_like|PF17005.1|1.6e+02,WD40_like|PF17005.1|0.00024,WD40_like|PF17005.1|0.0017,WD40_like|PF17005.1|3.2,eIF2A|PF08662.7|1.5e+02,eIF2A|PF08662.7|0.00074,eIF2A|PF08662.7|0.67,eIF2A|PF08662.7|4.1,Ge1_WD40|PF16529.1|2.1,Ge1_WD40|PF16529.1|0.19,Ge1_WD40|PF16529.1|12,Ge1_WD40|PF16529.1|9.9e+02,Ge1_WD40|PF16529.1|4.5e+02,Nucleoporin_N|PF08801.7|96,Nucleoporin_N|PF08801.7|0.0083,Nucleoporin_N|PF08801.7|0.83,PALB2_WD40|PF16756.1|6.3,PALB2_WD40|PF16756.1|8.8,PALB2_WD40|PF16756.1|0.54,PALB2_WD40|PF16756.1|0.96 S_Transcript_196891:3-1019(+)
MASTTPEPQPPFTPYKLKQTLPAHKRAISSVKFSPDGKYLASVSADKTARIYSIPQFSLLHELTGHDQGISDLAFSSDTRLLATASDDKSVKIWDVSTGHLIKTLIGHTNYVFCVNFNPQSNMIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVNFNRDGSLIVSSSYDGLCRIWDANTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTGHVNSKYCISTTFSITNGKYIVSGSEDNCVYLWEIQSRNIVQKLEGHTDTVISVACHPTENMIASGALENDKTIKIWTRERLTCFFAGDFGILSPLINMNDKDTR*

Click here to download the sequence:
Link to NCBI Protein BLAST