Transcript Information: S_Transcript_196997.p1


Annotated TAIR IDAT5G46420.1
Annotated Gene Name16S rRNA processing protein RimM family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18829999-18832893 | Forward length=653
E-Value2.7E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.27721876286646
Replicate 21.1491036227872
Replicate 30.57633550261252
Condition 2: 8 Hour
Replicate 12.8878132721118
Replicate 21.8643207199772
Replicate 32.8865210298412
Condition 3: 24 Hour
Replicate 11.3653052181621
Replicate 20.70824411176086
Replicate 32.8900259214196


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_196997.p1 GENE.S_Transcript_196997~~S_Transcript_196997.p1 ORF type:5prime_partial len:96 (-),score=20.35,RimM|PF01782.14|7.3e-15 S_Transcript_196997:103-390(-)
GGACAGTTGGACTTTATTGAGATTGGGTACATATCTGATGTGCATGGGCTTCAGGGAGAGATTCGTGTAAAGCATAACACTGATTTCCCCGACTTGCGTTTTGGACAGCCTGGGAGAAGATGGTTGCGGCAGGAATATTCCGGGAGACAAAAAGTTTTTGAAGTTGAGCTTGTGACAGGAAGAGGCCATCCTGGGGACAAGAGTTGGATAGTCAAATTGAGTGGCTTTGACAGTATAGATCAGGTCTTTGTTAATAAACCTCATCCTTCCCCTGTTTTCTGCCCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_196997.p1 GENE.S_Transcript_196997~~S_Transcript_196997.p1 ORF type:5prime_partial len:96 (-),score=20.35,RimM|PF01782.14|7.3e-15 S_Transcript_196997:103-390(-)
GQLDFIEIGYISDVHGLQGEIRVKHNTDFPDLRFGQPGRRWLRQEYSGRQKVFEVELVTGRGHPGDKSWIVKLSGFDSIDQVFVNKPHPSPVFCP*

Click here to download the sequence:
Link to NCBI Protein BLAST