Transcript Information: S_Transcript_196998.p1


Annotated TAIR IDAT5G46420.1
Annotated Gene Name16S rRNA processing protein RimM family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18829999-18832893 | Forward length=653
E-Value5.6E-101
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1501103502867
Replicate 23.782192495574
Replicate 34.1402060595838
Condition 2: 8 Hour
Replicate 15.0484597485458
Replicate 24.4743697279453
Replicate 33.9151556825476
Condition 3: 24 Hour
Replicate 13.388186010786
Replicate 23.4226980747953
Replicate 32.7795722405638


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_196998.p1 GENE.S_Transcript_196998~~S_Transcript_196998.p1 ORF type:5prime_partial len:245 (-),score=50.80,RimM|PF01782.14|1.4e-18,RimM|PF01782.14|4.4e+03,PRC|PF05239.12|1.1e+04,PRC|PF05239.12|1.5e-12 S_Transcript_196998:64-798(-)
GGACAGTTGGACTTTATTGAGATTGGGTACATATCTGATGTGCATGGGCTTCAGGGAGAGATTCGTGTAAAGCATAACACTGATTTCCCCGACTTGCGTTTTGGACAGCCTGGGAGAAGATGGTTGCGGCAGGAATATTCCGGGAGACAAAAAGTTTTTGAAGTTGAGCTTGTGACAGGAAGAGGCCATCCTGGGGACAAGAGTTGGATAGTCAAATTGAGTGGCTTTGACAGTATAGATCAGGCTAAACAGCTTGTTGGATCAACATTTCTTGTGAGGGAAAGTGACAGACCAGAGCTTGAGGAGGGCGAATTTTATAGTCGCGATCTTGTTGGCATGAGAGTTATTCTCAAGGACACAGGTGAAGTGGTAGGAACTGTTGTTAATGTCTTCAATAGTGGTGGCAATGATCTCTTGCACGTCATACTTGATTCTTCCACTGAGAATTCTGGGACGTCTGAATCAGGCCAACTTGTCTGGATCCCATTTGTTGAAGCAATTGTTCCAGATGTTAATTTGGATAGAAGAGAGATGCAGATTACCCCTCCCAAAGGACTTCTTCAGTTAAATATACACTCTGATGAGAGGTCCAAGAAAGAAAGACGTTTACTTGTGAGTTATTTGCGACTGCAGTTACTTGTTAAGTTTTCACCTTTCAAAACAACTAGGAGTGCAATACCAAGCTACCTACTTGCCTCAGTGCACTACCACATAGGAGAAGTTTCATGTTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_196998.p1 GENE.S_Transcript_196998~~S_Transcript_196998.p1 ORF type:5prime_partial len:245 (-),score=50.80,RimM|PF01782.14|1.4e-18,RimM|PF01782.14|4.4e+03,PRC|PF05239.12|1.1e+04,PRC|PF05239.12|1.5e-12 S_Transcript_196998:64-798(-)
GQLDFIEIGYISDVHGLQGEIRVKHNTDFPDLRFGQPGRRWLRQEYSGRQKVFEVELVTGRGHPGDKSWIVKLSGFDSIDQAKQLVGSTFLVRESDRPELEEGEFYSRDLVGMRVILKDTGEVVGTVVNVFNSGGNDLLHVILDSSTENSGTSESGQLVWIPFVEAIVPDVNLDRREMQITPPKGLLQLNIHSDERSKKERRLLVSYLRLQLLVKFSPFKTTRSAIPSYLLASVHYHIGEVSCC*

Click here to download the sequence:
Link to NCBI Protein BLAST