Transcript Information: S_Transcript_1978.p1


Annotated TAIR IDAT5G18880.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6300535-6301422 | Reverse length=295
E-Value9E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2936875600435
Replicate 20.91928289822978
Replicate 30.38422366840834
Condition 2: 8 Hour
Replicate 11.3328368948208
Replicate 22.0196807799753
Replicate 31.1842137558323
Condition 3: 24 Hour
Replicate 11.2136046383663
Replicate 20.78693790195651
Replicate 31.0509185168798


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_1978.p1 GENE.S_Transcript_1978~~S_Transcript_1978.p1 ORF type:complete len:144 (+),score=18.75,zf-RVT|PF13966.2|2.7e-17 S_Transcript_1978:411-842(+)
ATGCCTGCATTCCTAATTCTCAATAATGGGCTATGGGGAATTGACAGCAGCTGGTACTGGCGCAAACTCATGAAAATCAGAGAGGCTGAAGTTGTCACAAATGGGGTATGGCCTTCTTCTTCTGGGCAATACTCTATAAAAGAGGCTCACAAGAGTCTACTGGGTGTGAGACCTAACTTTTCTTATTGTAAATTGGTGTGGGGGAGATACTCTTTGCCTAAACATGGTATTTTCCTATGGTTAGCAGTTCAATCAAGGCTGCTGACAAAAGATAGGCTGCTAAAATTCAAGGTGGATGTGCCTGACAAGCTATGCGTGTTCTGTAACAGGGCAGAGGAATCTAATCCTCATTTGTTCTTTGAATGCCAGTATTCTCTGACAATATTGACAGGTATTGCAGACTGGTTGAAAATGGGGAAATGCCCTACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_1978.p1 GENE.S_Transcript_1978~~S_Transcript_1978.p1 ORF type:complete len:144 (+),score=18.75,zf-RVT|PF13966.2|2.7e-17 S_Transcript_1978:411-842(+)
MPAFLILNNGLWGIDSSWYWRKLMKIREAEVVTNGVWPSSSGQYSIKEAHKSLLGVRPNFSYCKLVWGRYSLPKHGIFLWLAVQSRLLTKDRLLKFKVDVPDKLCVFCNRAEESNPHLFFECQYSLTILTGIADWLKMGKCPT*

Click here to download the sequence:
Link to NCBI Protein BLAST