Transcript Information: S_Transcript_19794.p1


Annotated TAIR IDAT3G18020.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:6165449-6167515 | Forward length=688
E-Value2.2E-260
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.4875295337914
Replicate 25.4995223237207
Replicate 36.1926489195668
Condition 2: 8 Hour
Replicate 15.6909399380032
Replicate 25.4781506199917
Replicate 34.9695304533607
Condition 3: 24 Hour
Replicate 14.9647462478623
Replicate 24.6856267335264
Replicate 34.474878846069


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_19794.p1 GENE.S_Transcript_19794~~S_Transcript_19794.p1 ORF type:complete len:682 (+),score=117.10,PPR_2|PF13041.2|0.0023,PPR_2|PF13041.2|0.55,PPR_2|PF13041.2|7e-11,PPR_2|PF13041.2|6.3e-17,PPR_2|PF13041.2|0.00044,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|5.2e-08,PPR_2|PF13041.2|1,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|3.1e-13,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|2.2e-12,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|8.9e-07,PPR_2|PF13041.2|1.5e-10,PPR_1|PF12854.3|4.3,PPR_1|PF12854.3|9,PPR_1|PF12854.3|15,PPR_1|PF12854.3|5.7,PPR_1|PF12854.3|9.4e-12,PPR_1|PF12854.3|6,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.022,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|1.2e-07,PPR_1|PF12854.3|5e-11,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|1.1e-06,PPR_1|PF12854.3|9.6,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|14,PPR|PF01535.16|1.2,PPR|PF01535.16|66,PPR|PF01535.16|0.36,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|0.019,PPR|PF01535.16|0.027,PPR|PF01535.16|0.0099,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|0.029,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.0075,PPR|PF01535.16|0.26,PPR|PF01535.16|0.0011,PPR_3|PF13812.2|96,PPR_3|PF13812.2|7.6e+03,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|7.5e+03,PPR_3|PF13812.2|32,PPR_3|PF13812.2|0.09,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|10,PPR_3|PF13812.2|70,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|3,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.0032 S_Transcript_19794:221-2266(+)
ATGTTGAATGGCCGTTTCCAAACTCAAAGATCACGGCCGGCGTTTCTCTACATTTCTGGGCGTTTCAGGTTCCCGAAACGCGGCCTGGCATGCCCACCTGAGCTGATACAAGTTAAGAAAGAAGAAAACTTGGAAAAAGAAAGCAATATAACAATTACAAATAGGTCATATTGGACTAGAAAGATTCACAAGCTATGTGCTATAGATGGAAATGTAGATGAAGCCCTACACCTTTTCGAGCAACTACGACTTCGAGGCTATCGGCTCGACTCGTTGAATCTTAGCAGTGTAATCCATGCCCTTTGTTGTGCACGTCGTTATGCTGAGGCCCACCAACGTTTCCTCTTCTCTATTGCCTCTCAGTGTTTCCCTGATGAGCGTACTTGTAATGTTTTGATTGCGCGGTTGCTTGATTCTCGAACCCCACATGCCACCTTTCATTTGATTCTTTGTTTGATCAATGTGAACCCTGTGTTTGTGCCGTCTTTGATGAATTATAACCGTTTGATCGGTGAGTTTTGCAAAGTTTCGGAGCCCCATGTAGCTCATAGGGTGTTTTTAGACATGATGGATAAAGGGCATTGTCCAAATGTTGTTTCCTACACCACATTGTTAGGTGGGTATTGTAAATTTGGTCAAGTGGGTGATGCATATAAGCTTTTTGGTGAAATGTTTGAGAGGGGTGTGGTTCCTAATTCATTAACTTATAGTGTTTTGGTTGGTGGGGTTTTGAGTGACCATGATGCACAGCGTGGAATGGACCTCATGAATCAACTTTGGGAGAAGATGAGAAATGATGATGATTTTTCTGTAAATTGTGCTGCATTTTCCAAGGTTATTGATACTTTGTGTAGGGAAGGGTTCTTTCAACAAGTGTTTCAAATTGCTCAAGATATGCCCCAAGGTAAAAGTGTTCCTGAGGAATTTGCTTATGCCGAAATGATTGATTCTCTATGTAGAGCTGGTAGGCATCATGGGGCATCAAGGATAGTGTATATAATGAGAAAGAGAGGGTTTACACCAAGCATGGCATCATACAATTCTATTGTTCATGGGTTGAGCAAGGATGGTGGTTGTATGCGGGCGTTTCAACTTTTCCAGGAAGGAATGAAATTTGGCTATGTTCCATCTGAATTCACTTACAAAATTTTAGTTGAAAGTCTTTGCCGAGAAGGTGATGTGTCCAAGGCAAAAGAGGTTCTACATTTCATCATAAAACAGAAAGCCGTGAACCAAACTAGAATCTATAATATATATCTCAGGGCCCTTTGTCTCATTAACAATGCGACAGAGCTCCTAAATACACTTGTTTCAATGCTTCAGGCACAATGTAAACCTGACGTGATCACTCTTAACACAGTCCTTAATGGATTGTGCAAGATGAGCAGGATTGAGGATGCCATGAAAGTTTTCAATGACATGATGATGGGTGGATTTTGTGCACCTGATTCTGTGACTTTCACTACTGTTATTGGTGGTTTGTTGGACGCTGGAAAAATTAAAGAAGCTCTTATCTTGTTGAATGAGAGAATGCCTGAAAGAGGGGTCAGTCCTAGTGTGGTGACTTATAATGCAGTTCTTCGAGGATTATTTAAGCTTGGGAAGGCTTATGAAGCCATGGAGACCTACAGAACCATGGTAACTCAAGGTGTGGAAGCTGACTGTACCACATACACTATAATTATCGATGGACTATTTGAGGCTGATCGTATAGATGAGGCCAAAAGATTTTGGGATGAAATAATATGGCCCTCTAAGGTTCATGACAATTTTGTCTATGCATCTATTCTGAAAGGGCTTTCATGGTCAGGTAGGTTCGATGAAGCTTGCAACTTTTTGTACGAGCTAGTAGATTGCGGTGCATCTCCAAATATTGTCAACTATAACATTCTGATTGACAATGCTTGCAAGTTGGGTTTGAAGAAGCAAGCTTATGAACTTGTTGGAGAGATGACGAAGAATGGGCTATCTCCTGATGCTGTGACTTGGAGGATTCTTGACAAATTACATGGAAATTTAGGGAAAAAATTTGTTGCAGAATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_19794.p1 GENE.S_Transcript_19794~~S_Transcript_19794.p1 ORF type:complete len:682 (+),score=117.10,PPR_2|PF13041.2|0.0023,PPR_2|PF13041.2|0.55,PPR_2|PF13041.2|7e-11,PPR_2|PF13041.2|6.3e-17,PPR_2|PF13041.2|0.00044,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|5.2e-08,PPR_2|PF13041.2|1,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|3.1e-13,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|2.2e-12,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|8.9e-07,PPR_2|PF13041.2|1.5e-10,PPR_1|PF12854.3|4.3,PPR_1|PF12854.3|9,PPR_1|PF12854.3|15,PPR_1|PF12854.3|5.7,PPR_1|PF12854.3|9.4e-12,PPR_1|PF12854.3|6,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.022,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|1.2e-07,PPR_1|PF12854.3|5e-11,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|1.1e-06,PPR_1|PF12854.3|9.6,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|14,PPR|PF01535.16|1.2,PPR|PF01535.16|66,PPR|PF01535.16|0.36,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|0.019,PPR|PF01535.16|0.027,PPR|PF01535.16|0.0099,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|0.029,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.0075,PPR|PF01535.16|0.26,PPR|PF01535.16|0.0011,PPR_3|PF13812.2|96,PPR_3|PF13812.2|7.6e+03,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|7.5e+03,PPR_3|PF13812.2|32,PPR_3|PF13812.2|0.09,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|10,PPR_3|PF13812.2|70,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|3,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.0032 S_Transcript_19794:221-2266(+)
MLNGRFQTQRSRPAFLYISGRFRFPKRGLACPPELIQVKKEENLEKESNITITNRSYWTRKIHKLCAIDGNVDEALHLFEQLRLRGYRLDSLNLSSVIHALCCARRYAEAHQRFLFSIASQCFPDERTCNVLIARLLDSRTPHATFHLILCLINVNPVFVPSLMNYNRLIGEFCKVSEPHVAHRVFLDMMDKGHCPNVVSYTTLLGGYCKFGQVGDAYKLFGEMFERGVVPNSLTYSVLVGGVLSDHDAQRGMDLMNQLWEKMRNDDDFSVNCAAFSKVIDTLCREGFFQQVFQIAQDMPQGKSVPEEFAYAEMIDSLCRAGRHHGASRIVYIMRKRGFTPSMASYNSIVHGLSKDGGCMRAFQLFQEGMKFGYVPSEFTYKILVESLCREGDVSKAKEVLHFIIKQKAVNQTRIYNIYLRALCLINNATELLNTLVSMLQAQCKPDVITLNTVLNGLCKMSRIEDAMKVFNDMMMGGFCAPDSVTFTTVIGGLLDAGKIKEALILLNERMPERGVSPSVVTYNAVLRGLFKLGKAYEAMETYRTMVTQGVEADCTTYTIIIDGLFEADRIDEAKRFWDEIIWPSKVHDNFVYASILKGLSWSGRFDEACNFLYELVDCGASPNIVNYNILIDNACKLGLKKQAYELVGEMTKNGLSPDAVTWRILDKLHGNLGKKFVAES*

Click here to download the sequence:
Link to NCBI Protein BLAST