Transcript Information: S_Transcript_19917.p1


Annotated TAIR IDAT1G58060.1
Annotated Gene NameRNA helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21489480-21501775 | Reverse length=1459
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2973746534482
Replicate 25.6986826108273
Replicate 36.4899201621201
Condition 2: 8 Hour
Replicate 17.0242399385817
Replicate 26.9978294323316
Replicate 36.9453294921444
Condition 3: 24 Hour
Replicate 19.5247833229131
Replicate 26.9011843307124
Replicate 36.2457432235418


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_19917.p1 GENE.S_Transcript_19917~~S_Transcript_19917.p1 ORF type:complete len:844 (+),score=169.61,OB_NTP_bind|PF07717.12|1.1e-21,HA2|PF04408.19|1.3e-18,Helicase_C|PF00271.27|2.4e-13,DEAD|PF00270.25|2.5e-08 S_Transcript_19917:431-2962(+)
ATGTTGCGCCAGCTAAAGAAGAATAATGTCCTGGTCATTTGTGGAGAAACAGGTTCTGGGAAGACAACTCAGGTCCCACAATATATATTGGATGACATGATTGCGGCTGGTCATGGTGGATATTGCAACATCATCTGTACACAACCACGGAGAATAGCGGCTATTTCTGTTGCTGAAAGGGTTGCTGAAGAGAGATGTGAACCTGCACCAGGTTTGGATGGATCATTGGTTGGTTATCAAGTTCGTCTAGATAGCGCAAGGAATGATCAAACTAAGCTCCTCTTCTGTACGACTGGTATCCTCTTACGTCGAATTGCGGGAAACAAGAGCTTCCACGGTGTTACTCATGTTATAGTTGATGAGGTGCATGAACGATCTTTATTGGGTGACTTTCTACTTATTGTTTTGAAGAACTTGCTGGAAAAGCAGTCTGCTAATGGAAACCCAACATTGAAAGTGATTCTTATGTCTGCAACTGTTGATTCAAGTTTGTTTTCAAGATATTTTGGCGAGTGCCCAGTTATTACTGCAGAAGGCCGAACTCATCCTGTGTCAACCTACTTTCTTGAAGATATATATGAGACTATTGGCTATCATCTTTCATCTGATTCTCCAGCCTGTTTAGGCTCTGAGACATATGGATATGAGACTATGAGTGCTTCTGTCAACAACCGTAGAGGGAAGAAAAATCTCGTCTTATCTTCATGGGGGGATGAATCTCTGCTTTCAGACGAGTGCATGAATCCATACTATGAACCCAGCTCTTATCAAGCTTACAGTGAACAAACACAACTGAATCTGAAAAAATTGAATGAAGATGTAATTGATTATGATCTTCTTGAAGACTTGGTGTGTCACATTGATGAAAATTGTGGTGATGGCGCTATTCTTGTCTTCTTGCCTGGGGTTTCCGAAATTCACAGATTATATGATAAATTAGCTGCCTCTTATCGCTTTGGTGGAGAATCTGCTGAGTGGCTCCTGCCATTACATTCTTCTGTAGCCACCACTGACCAAAAAAGGGTTTTTCAACAGCCACCTAAAGATATGCGCAAGGTTATAATAGCGACAAATATTGCAGAGACGAGCTTAACCATAGATGATGTAGTTTATGTTATTGATTCCGGAAGGCACAAGGAGTACCGCTATGACCCAAAAAAGAAACTTTCTATGATGGTTGAAGATTGGATATCTCAAGCAAATGCAAAGCAGCGACGAGGAAGAGCTGGACGTGTAAAACCTGGCATATGTTATTGTTTGTATACACACCAGAGATTTGAAAAGCTAATGCGCCGATTCCAGGTCCCTGAGATTTTAAGAATGCCTCTGGTAGAACTTTGCCTGCAGATTAAGCTTCTTTCTCTTGGTGACATAAAATTTTTGTTGTCCAAGGCACTTGATGTTCCAAAGGTTGAAGCTGTGAACTCAGCTATATCATCACTAAAGGAGGTTGGTGCTGTTGATGAAAATGAAGAACTCACTCCACTTGGGCATCATTTGGCCAAATTGCCAGTTGATCTGCTTCTTGGAAAGATGATGTTGTATGGTGCAATGTTTGGTTGTCTCTCGCCAATCTTGTCAATTTCAGCATTTCTGAGCCACAAGTCACCTTTTGTTCACTCCAAAGATGAGAGGGAATCTGTTGAAAGATCAAAATTGGCCATTTTGATAGACAAGACAGATGGATCACGTGATCCAGGTGATTATGAGAGGGAGTCTGATCACATCATAATGATGGTTGCCTACAAAAAATGGGAAAGGATTCTAAAAGATAAAGGAGCTAAAGCTGCACAAACTTTCTGCAAGTCATACTCTCTTAGCAGCTCAGTTATGCACATGATAAGGGATATGCGAGTACAGCTTGGAACTCTATTAGCTGATATTGGGCTTATCCATCTTCCGAAAGATTATCAGATCCGGGTTCAGAAGAAGGGAAACTTGGACGGTTGGTTTTCTGATGTATCACAGCCCTTTAACAAGTATGCAAATCATTCTGTCATCGTGAAGGCAATACTATGTGCAGGCTTGTACCCTAATGTAGCTGCAACCATAGAGGGTATTCATGCTCCAGCTCTTGGGAACCTAAGACAATCGCTTAAACCTACATCCAAGGGTAGGCCGTCCTGGTACGATGGACGAAGAGAAGTTCACATACATCCTTCTTCTATCAACAGTGATTCAAAGGCTTTTCAGTATCCATTCCTTGTTTTCCTTGAAAAGGTTGAGACCAACAAGGTCTTCCTGCGTGACACTACAATCATCTCCCCCTATTCTCTTTTGCTTTTTGGTGGGACCATTAATGTTCAGCATCAGATGGGACTTGTCACAGTAGATAGTTGGTTGAAGGTAGCTGCACCAGCCCAAACTGCTGTGTTGTTCAAGGAGCTCAGATCTACGCTTCAATATGTTCTCAATGATTTGATCAATAAGCCACAGGTACTCTCCACAGCACCCCCTGCCCAAAAGAGAAAAAAATTACCTCCTGTTGCTTGTTTTATAAGCTGCTTGTTATTCGGATTCAGGCAGACGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_19917.p1 GENE.S_Transcript_19917~~S_Transcript_19917.p1 ORF type:complete len:844 (+),score=169.61,OB_NTP_bind|PF07717.12|1.1e-21,HA2|PF04408.19|1.3e-18,Helicase_C|PF00271.27|2.4e-13,DEAD|PF00270.25|2.5e-08 S_Transcript_19917:431-2962(+)
MLRQLKKNNVLVICGETGSGKTTQVPQYILDDMIAAGHGGYCNIICTQPRRIAAISVAERVAEERCEPAPGLDGSLVGYQVRLDSARNDQTKLLFCTTGILLRRIAGNKSFHGVTHVIVDEVHERSLLGDFLLIVLKNLLEKQSANGNPTLKVILMSATVDSSLFSRYFGECPVITAEGRTHPVSTYFLEDIYETIGYHLSSDSPACLGSETYGYETMSASVNNRRGKKNLVLSSWGDESLLSDECMNPYYEPSSYQAYSEQTQLNLKKLNEDVIDYDLLEDLVCHIDENCGDGAILVFLPGVSEIHRLYDKLAASYRFGGESAEWLLPLHSSVATTDQKRVFQQPPKDMRKVIIATNIAETSLTIDDVVYVIDSGRHKEYRYDPKKKLSMMVEDWISQANAKQRRGRAGRVKPGICYCLYTHQRFEKLMRRFQVPEILRMPLVELCLQIKLLSLGDIKFLLSKALDVPKVEAVNSAISSLKEVGAVDENEELTPLGHHLAKLPVDLLLGKMMLYGAMFGCLSPILSISAFLSHKSPFVHSKDERESVERSKLAILIDKTDGSRDPGDYERESDHIIMMVAYKKWERILKDKGAKAAQTFCKSYSLSSSVMHMIRDMRVQLGTLLADIGLIHLPKDYQIRVQKKGNLDGWFSDVSQPFNKYANHSVIVKAILCAGLYPNVAATIEGIHAPALGNLRQSLKPTSKGRPSWYDGRREVHIHPSSINSDSKAFQYPFLVFLEKVETNKVFLRDTTIISPYSLLLFGGTINVQHQMGLVTVDSWLKVAAPAQTAVLFKELRSTLQYVLNDLINKPQVLSTAPPAQKRKKLPPVACFISCLLFGFRQT*

Click here to download the sequence:
Link to NCBI Protein BLAST