Transcript Information: S_Transcript_199401.p1


Annotated TAIR IDAT1G44910.1
Annotated Gene Namepre-mRNA-processing protein 40A
Annotated Gene Symbol(s)ATPRP40A, PRP40A
Annotation TypeHomolog
Chromosome Positionchr1:16975930-16982818 | Forward length=958
E-Value5E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8513392163604
Replicate 20.38370068795678
Replicate 31.1226013268279
Condition 2: 8 Hour
Replicate 10.37087635334144
Replicate 20.19453781425849
Replicate 30.55606558969517
Condition 3: 24 Hour
Replicate 10.18995550861386
Replicate 20.59122986720906
Replicate 30.87728850104752


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_199401.p1 GENE.S_Transcript_199401~~S_Transcript_199401.p1 ORF type:5prime_partial len:115 (-),score=34.89,WW|PF00397.22|1.8e-11 S_Transcript_199401:134-478(-)
GGAATTCCTTTTTCTTCACCATATATGTTTCAACCAGCATCCCATATGCCTACTCCTGCTGCACCTGTTCCTGGACAACCTTGGTTATCATCTGGAAGTCAAGGCTCCACACCTTTTGCGCCAGTTCAGCAAACCGCAGACCAGTCTTCAGTTTCTTCTGCCGCTGTTCCTGCTGCCAATCCTCCTGAAACAAGTCAACAGTCTGCTTCAGATTGGCAAGAGCATGCTACTCCTGATGGAAGAAGATATTATTATAACAAGAAGAATAAGCAGTCCAGCTGGGAGAAGCCCTTGGAGTTGATGACTCCTGTTGAGATGTCATGGCAAGTCAGGAGACTACTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_199401.p1 GENE.S_Transcript_199401~~S_Transcript_199401.p1 ORF type:5prime_partial len:115 (-),score=34.89,WW|PF00397.22|1.8e-11 S_Transcript_199401:134-478(-)
GIPFSSPYMFQPASHMPTPAAPVPGQPWLSSGSQGSTPFAPVQQTADQSSVSSAAVPAANPPETSQQSASDWQEHATPDGRRYYYNKKNKQSSWEKPLELMTPVEMSWQVRRLL*

Click here to download the sequence:
Link to NCBI Protein BLAST