Transcript Information: S_Transcript_19982.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value9E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.5622465049686
Replicate 20.10358117163152
Replicate 30.17317123083193
Condition 2: 8 Hour
Replicate 10.30035761010047
Replicate 20.15754822985723
Replicate 30.55040921045726
Condition 3: 24 Hour
Replicate 10.15383720768024
Replicate 20.15960430687569
Replicate 30.23682670802926


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_19982.p1 GENE.S_Transcript_19982~~S_Transcript_19982.p1 ORF type:complete len:426 (-),score=35.87,UBN2|PF14223.2|1.9e+03,UBN2|PF14223.2|3.2e-38,UBN2_2|PF14227.2|5e-17,DUF4219|PF13961.2|1.3e-06,UBN2_3|PF14244.2|5.3e-06 S_Transcript_19982:568-1845(-)
ATGGCCACATCAACCTCAAACACTATTTTCAATTATGCCCCAAACAATTGGGTTCCAATATTCACTGGGGAGCACTTTGAATATTGGAGTATTCAAATGAGGACTCTGTTAACATCACAGGGCCTCTGGAATTTGGTACAAAATGGGTACCAACAACCCAAAGATGCTAGTGAATTAGCATCTTGGGATGAAAATGCTAAAAAGCAATACGAAGAAAATCAAAGAAAAGATCAGTGTGTGTTGTCCTATATTCATCGGGGTGTCGATATGACAATATTTCCCCGCATCATGGCCGCCACAACGGCTAGGGAGGCTTGGAAAATTTTACAAAATGAGTTCAAGGGCTCCAATAAGGTAATCACTATCAAACTCCAATCTCTTTGGAAAGATTTTGATAATTTACAAATGACAGAAGGTGAAACAATACAGACATTCTTCGGTCGTGTTACAATAATTGTAAATCAAATACGCAGTTATGGAGACACGATCGAAGATGTCAAAATAATACAAAAAATATTAAGAAGCCTTCTGTCAAAATATGATCATATAGTGGCTGCAATTGAAGAATCTAAAGATTTAACTCAACTAACCTTAACTGAATTAATGGGTTCTTTACAAGCCCATGAAGATAGAATGAAAAGATTTTCAGAGCAGCCACTTGAACAAGCCTTTCAGGCTAAAATAAAATTTTCGAACATAGAAAATAAAAATCAATATAGCCACGGTAAAAATTTTCAATCAAAAAGGGGACAATCTAATAACCGTGGCAGGGGGAGAGGAACTTATAAAAATCAAGAAGACCGAGAAAATAGTCAATCCGGTCCATATTGTAAATTGTGGAAGAAAAAAGGTCATGACACAAAAGATTGCCGGTATAAGTGTAAAAGATGCAAAAATCATATGCACTTTGAAAAAGATTGCTGGTTCCGGCAAAAAGAGCAGGCCAATTTTTTAGAGAAAAATGAAACTAGTGACCAATTATTTTATTCATGTCTAAACACTCACCAAGAGTCATCCGACATTTGGTATTTAGATAGTGGTTGTTCAAACCACATGACGGGTGATAAAAATTCACTTGTTAAACTTGATGAAAATGTTAAATCTCAAATAACTCTTGGTGATGGAAGATCTCAAGATGTAGCAGGTAAAGGGACAATTGTAGTAAAAACTAAACATGGCACATCTAAATTTATCCATGATGTTTTATACTGGCCTAGCTCAAAACCTGCTAAGTGTGGGTCAACTTGTTCAAAGAGGCTATTTGGTGAATTTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_19982.p1 GENE.S_Transcript_19982~~S_Transcript_19982.p1 ORF type:complete len:426 (-),score=35.87,UBN2|PF14223.2|1.9e+03,UBN2|PF14223.2|3.2e-38,UBN2_2|PF14227.2|5e-17,DUF4219|PF13961.2|1.3e-06,UBN2_3|PF14244.2|5.3e-06 S_Transcript_19982:568-1845(-)
MATSTSNTIFNYAPNNWVPIFTGEHFEYWSIQMRTLLTSQGLWNLVQNGYQQPKDASELASWDENAKKQYEENQRKDQCVLSYIHRGVDMTIFPRIMAATTAREAWKILQNEFKGSNKVITIKLQSLWKDFDNLQMTEGETIQTFFGRVTIIVNQIRSYGDTIEDVKIIQKILRSLLSKYDHIVAAIEESKDLTQLTLTELMGSLQAHEDRMKRFSEQPLEQAFQAKIKFSNIENKNQYSHGKNFQSKRGQSNNRGRGRGTYKNQEDRENSQSGPYCKLWKKKGHDTKDCRYKCKRCKNHMHFEKDCWFRQKEQANFLEKNETSDQLFYSCLNTHQESSDIWYLDSGCSNHMTGDKNSLVKLDENVKSQITLGDGRSQDVAGKGTIVVKTKHGTSKFIHDVLYWPSSKPAKCGSTCSKRLFGEFD*

Click here to download the sequence:
Link to NCBI Protein BLAST