Transcript Information: S_Transcript_20176.p1


Annotated TAIR IDAT2G15790.1
Annotated Gene Namepeptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
Annotated Gene Symbol(s)SQN, CYP40
Annotation TypeOrtholog
Chromosome Positionchr2:6878144-6880743 | Reverse length=361
E-Value5.9E-118
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.333293301674
Replicate 210.82167244456
Replicate 36.9423227082755
Condition 2: 8 Hour
Replicate 113.460132291422
Replicate 213.525186059759
Replicate 315.237183839302
Condition 3: 24 Hour
Replicate 16.8940126605297
Replicate 28.6174188503222
Replicate 38.7270191667892


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_20176.p1 GENE.S_Transcript_20176~~S_Transcript_20176.p1 ORF type:complete len:263 (+),score=69.85,Pro_isomerase|PF00160.17|2.8e-17,TPR_11|PF13414.2|1.3e-05,TPR_11|PF13414.2|5.4e-06,TPR_1|PF00515.24|1.9,TPR_1|PF00515.24|1.6e+02,TPR_1|PF00515.24|5.6e-09,TPR_2|PF07719.13|0.64,TPR_2|PF07719.13|1.6e+03,TPR_2|PF07719.13|4.4e-08,TPR_8|PF13181.2|4.2e+02,TPR_8|PF13181.2|4e+03,TPR_8|PF13181.2|1.9e-07 S_Transcript_20176:726-1514(+)
ATGAGCGGAAGGGAATGTTGTCCATGGTCAGTTTCTGACCCCAATACCAATGGATCCCAGTTCTTCATTACCACCACCCAAGCTCATCATCTTGATGGAAAGTGTGTGGTGTTTGGGAGAGTGATCAAAGGTTTGGGGGTGATTCGTTCAATTGAGCATGTTGATATCGAAAATGAGGGTCATCCATCACTTGATATCGTCATCGAGGACTGTGGAGAAATCCCTGAAGGGGCAGATTATGGAATCATTAACTTTTTCAAAGATGGGGACACTTATCCTGATTCGATATCTGACCTTGATGCAAAATCGGATGATTTCTCATGGTGGGTTACTGCAATTGATGGCATTAAGGCCTTTGGCAATGAGAAGTTCAAGAAGCAAGATTATAAGTTGGCTATTCGCAAATATCACAAAGCTTTGCGATACTTGGATACATGCTGGGATATGGAGACAATAGATGGAGAAAAGAGCTTGACTTTGAGGAAAATGAGGTGTCAGTTAAATACAAATGTCGCGGCCTGTAAGTTGAAGATGGGAGATATAGATGGAGCCTTGTGGGATACGGAATTAGCACTTCGTGATGAAGAAGACAATGTGAAGGCTCACTTCCGAAGGGGTCAGGCATACATTGCTCTCAGTGACATAGATGCAGCAGCTGAATGCTTCGGAAAAGCTCTGGAGCTAGAGCCAAATGATGGTACCATAAAAAGAGAACTTGCTGCAACAAGGAAAAAGATAGCTGATAGACACAATAAGGAGAAGAAAACATACACTAGAATGTTCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_20176.p1 GENE.S_Transcript_20176~~S_Transcript_20176.p1 ORF type:complete len:263 (+),score=69.85,Pro_isomerase|PF00160.17|2.8e-17,TPR_11|PF13414.2|1.3e-05,TPR_11|PF13414.2|5.4e-06,TPR_1|PF00515.24|1.9,TPR_1|PF00515.24|1.6e+02,TPR_1|PF00515.24|5.6e-09,TPR_2|PF07719.13|0.64,TPR_2|PF07719.13|1.6e+03,TPR_2|PF07719.13|4.4e-08,TPR_8|PF13181.2|4.2e+02,TPR_8|PF13181.2|4e+03,TPR_8|PF13181.2|1.9e-07 S_Transcript_20176:726-1514(+)
MSGRECCPWSVSDPNTNGSQFFITTTQAHHLDGKCVVFGRVIKGLGVIRSIEHVDIENEGHPSLDIVIEDCGEIPEGADYGIINFFKDGDTYPDSISDLDAKSDDFSWWVTAIDGIKAFGNEKFKKQDYKLAIRKYHKALRYLDTCWDMETIDGEKSLTLRKMRCQLNTNVAACKLKMGDIDGALWDTELALRDEEDNVKAHFRRGQAYIALSDIDAAAECFGKALELEPNDGTIKRELAATRKKIADRHNKEKKTYTRMFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST