Transcript Information: S_Transcript_202176.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value6E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.78175238589619
Replicate 30.21782759153859
Condition 2: 8 Hour
Replicate 10.58770760716508
Replicate 20.52846886550535
Replicate 30.50352395917279
Condition 3: 24 Hour
Replicate 11.1180452180225
Replicate 20.53536562778773
Replicate 30.89369448679545


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_202176.p1 GENE.S_Transcript_202176~~S_Transcript_202176.p1 ORF type:3prime_partial len:254 (-),score=34.28,UBN2_2|PF14227.2|1e-30,UBN2|PF14223.2|8.1e-13,UBN2_3|PF14244.2|7.4e-06 S_Transcript_202176:2-760(-)
ATGACTTCTAGAATAGACATTGAGAAGTTCGATGGCAAGATGAGCTTTGCCATGTGGCAAGTGCAAATGAAAGCCGCTCTCACTCACCTAGGCTTGAAAATAGCCTTGGAAGGCAAGGACAAAAAGCCCACAACTACAACCGACGCTCAATGGGAGGAGATTGACGACAAAGCTCGCTCCCTTATTCAACTTAGCCTTACTCGTGAAGTTCTTCGAGAAGTATTTAGTGAGAAAACCACTATGGCTCTATGGGACAAACTTGCGGCTCTTTACAACACCAAGTCGTTTGCTAATAAACTTGTCCTTAAAGACCGTCTATATACTCTCCGCCAAGATAAAGGTACATCCCTTAAAAACCATTTAGATGAGTTTAATTCCATCTTAGTTGATTTGGAGAATTTGGATGTTACTATTGGTGACGAGGATAAGGCTGTTTTGTTGGTTGTGTCCTTGAATCCCGTAAAGTATAAACACTTTAAAGAGATCATGTTATATGGTAATAGGACCACCCTAACTTTTCAAGAAGTTAAAACCAACCTATTCTCTAAAGAGAAATTTGATGCCGAACATGATAAAACGGATTCAAGAGATGAGGGTTTGTTTGTTAGAGGTAGACCCTCTAATAAATCAGATAAGAAAAACCGTGGTGGTAGATCAAAGTCTAGGGGTAAGAACAATGCCCATAAAAATTGCAAGTATTGTAAGAAACCTGGACACATAGTTGATGAGTGTTTTAAACTCAAAAACAAACTTGAAAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_202176.p1 GENE.S_Transcript_202176~~S_Transcript_202176.p1 ORF type:3prime_partial len:254 (-),score=34.28,UBN2_2|PF14227.2|1e-30,UBN2|PF14223.2|8.1e-13,UBN2_3|PF14244.2|7.4e-06 S_Transcript_202176:2-760(-)
MTSRIDIEKFDGKMSFAMWQVQMKAALTHLGLKIALEGKDKKPTTTTDAQWEEIDDKARSLIQLSLTREVLREVFSEKTTMALWDKLAALYNTKSFANKLVLKDRLYTLRQDKGTSLKNHLDEFNSILVDLENLDVTIGDEDKAVLLVVSLNPVKYKHFKEIMLYGNRTTLTFQEVKTNLFSKEKFDAEHDKTDSRDEGLFVRGRPSNKSDKKNRGGRSKSRGKNNAHKNCKYCKKPGHIVDECFKLKNKLER

Click here to download the sequence:
Link to NCBI Protein BLAST