Transcript Information: S_Transcript_202180.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value0.0001
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0955119082819
Replicate 22.779564038742
Replicate 32.5413219012835
Condition 2: 8 Hour
Replicate 12.2668721990653
Replicate 22.9065787602794
Replicate 31.930175176829
Condition 3: 24 Hour
Replicate 13.6981495673053
Replicate 23.7475593945141
Replicate 36.0572626327247


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_202180.p1 GENE.S_Transcript_202180~~S_Transcript_202180.p1 ORF type:3prime_partial len:254 (-),score=41.03,UBN2_2|PF14227.2|9.5e-32,UBN2|PF14223.2|2.6e-14,UBN2_3|PF14244.2|1.2e-07 S_Transcript_202180:2-760(-)
ATGACTTCTAAAATAGACATTGAGAAGTTCGATGGCAAGATTAGCTTTGCTATGTGGCAAGTACAAATGAAAGCCGCCCTCACTCATCAAGGCTTGAAAAAGGCCTTGGCCGGCAAGGACAAGAAACCCGCTGAAATAACCGACACTCAATGGGAGGAGATTGACGACAAAGCTCTCTCCCTTATTCAACTGAGCCTTACTCGTGAAGTTCTTCGTGAAGTATTCAGCGAGAAGACAACAAAGGCTCTTTGGGACAAACTTGCGGAACTCTACAACACAAAGTCGTTCGCTAATAAACTTGTTCTCAAAGACCGTCTCTATACTCTCCGCCAAGATAAAGGTACATCCCTTAAAGATCATCTTGATGAGTTTAATTCCATCTTAGTTGATTTGGAGAATTTGGATGTTACTATTGGTGACGAGGATAAGGCTGTTTTGTTGGTTGTGTCCTTGAATCCCGTAAAGTATAAACACTTTAAAGAGATCATGTTATATGGTAATAGGACCACCCTAACTTTTCAAGAAGTTAAAACCAACCTATTCTCTAAAGAGAAATTTGATGCCGAACATGATAAAACGGATTCAAGAGATGAGGGTTTGTTTGTTAGAGGTAGACCCTCTAATAAATCAGATAAGAAAAACCGTGGTGGTAGATCAAAGTCTAGGGGTAAGAACAATGCCCATAAAAATTGCAAGTATTGTAAGAAACCTGGACACATAGTTGATGAGTGTTTTAAACTCAAAAACAAACTTGAAAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_202180.p1 GENE.S_Transcript_202180~~S_Transcript_202180.p1 ORF type:3prime_partial len:254 (-),score=41.03,UBN2_2|PF14227.2|9.5e-32,UBN2|PF14223.2|2.6e-14,UBN2_3|PF14244.2|1.2e-07 S_Transcript_202180:2-760(-)
MTSKIDIEKFDGKISFAMWQVQMKAALTHQGLKKALAGKDKKPAEITDTQWEEIDDKALSLIQLSLTREVLREVFSEKTTKALWDKLAELYNTKSFANKLVLKDRLYTLRQDKGTSLKDHLDEFNSILVDLENLDVTIGDEDKAVLLVVSLNPVKYKHFKEIMLYGNRTTLTFQEVKTNLFSKEKFDAEHDKTDSRDEGLFVRGRPSNKSDKKNRGGRSKSRGKNNAHKNCKYCKKPGHIVDECFKLKNKLER

Click here to download the sequence:
Link to NCBI Protein BLAST