Transcript Information: S_Transcript_20272.p1


Annotated TAIR IDAT1G59720.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)CRR28
Annotation TypeOrtholog
Chromosome Positionchr1:21939868-21941784 | Reverse length=638
E-Value1.8E-280
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.7091599752556
Replicate 28.4543126371653
Replicate 311.003649259963
Condition 2: 8 Hour
Replicate 114.121350899076
Replicate 216.24309010481
Replicate 315.04648066234
Condition 3: 24 Hour
Replicate 14.2221203385182
Replicate 23.3138682472979
Replicate 34.323779040877


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_20272.p1 GENE.S_Transcript_20272~~S_Transcript_20272.p1 ORF type:complete len:595 (+),score=101.37,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|22,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|0.0026,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|20,PPR_2|PF13041.2|0.093,PPR_2|PF13041.2|3.7,DYW_deaminase|PF14432.2|3.7e-36,PPR|PF01535.16|20,PPR|PF01535.16|95,PPR|PF01535.16|0.16,PPR|PF01535.16|4e-05,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.00036,PPR|PF01535.16|0.48,PPR|PF01535.16|0.069,PPR|PF01535.16|22,PPR|PF01535.16|1.6e+03,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.16,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.94,PPR_3|PF13812.2|9.4,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|59,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|6.7e+02 S_Transcript_20272:169-1953(+)
ATGCTCCTAGCTTCAACAACCACATTTCACCAACCCAATCTTCTCACTTACCTCAACCAATGTTCCTCCATAACCCAATTAAAGCAAATCCATGCCCAAGTAATCCGTACAATCCCAACCGACAACCCAAAAGACCTCCTTTTTCTTCACAGTAGACTTCTCCATTACACCTCCTTCATTGACATTGACTATTCCTTCAAAATTTTCAACCAAATTCATAACCCCAACTCATTTATATGGAATACCCTCATAAGAGCTTGTGCTAGTAGCCCTTCTCACCATAAATCCCTTGCCTTTAAACTCTTTCATGACATGTTGTGCGAGGGTTTTGTTCAACTTGATAAGCACACCTTCCCTTTTGTTCTCAAAGCTTGTGCTTACCTTTTTGCTGAAGATGAAGGGAAACAGGCTCATGCCTATGCTGTGAAACTTGGGTTTGTTTCTGATGTTTATGTTAATAATAGTCTCAGCCATTTTTATGGGTCCTGTGGGTTTTTGGATTGTGCACAGAAGGTGTTTGATAAAATGCCTGAGAGAAGTGTTGTGTCATGGAATGTTATGATTGATGTGTTGGTTCAGTTGGGGGAGCTTGATAGGGCGTTGGAATTGTTTGGGCTGATTCAGGGTTTGTTTGAGCCAGATGGGTATAGTTTACAGAGTGTTTTATCTGCTTGTGCTGGACTTGGTGCTTTGGGCTCTGGTATGTGGGCTCATGCTTATATTTTGAGAGTTTGTGATGTTAATTTGCAAAGTGATGTTTTGGTGAACAACTCATTGGTGGAAATGTATTGTAAATGTGGGATGTTAAGTTTGGCTAAGCAGGTCTTTGATGGGATGATTAAGCGCGACGTTAATTCGTGGAATTCGATGATTTTAGGACTAGCTATGCATGGCCATGTTGAGTTGGCAATGGAACATTTTGATCATATGACCAAGGTGGATGGGCTGAGGCCAAATTCGATCACTTTTGTTGGCATTTTGAGTGCTTGCAACCACAGGGGTATGGTTGAATTGGGCCGTGAGTACTTTGATAAGATGGTGAAGGATTATGGAATTGAACCTCGGCTGGAACATTTTGGGTGTATGGTTGATCTTCTTGCTTGTGCGGGATTGGTTGACGAGGCATTAGAACTTGTGTCAAATATGCCTATGAAACCTGATGTCGTGATATGGAGAAGTCTTCTTGATGCTTGCTGTAAGAAAAATGCAGGCATAGAACTAAGTGAAGAAGTAGCAAAGAAGATCCTTGAATCAGAAGCTACCTGTAGTGGTGTTTATGTGCTTCTCTCCAGAGTTTACGCCTCAGCTGCTCGATGGAATGATGTCGGATCAATAAGGAAGTTGATGACTGACAAAGGCATAACTAAAGAACCTGGTTGCAGTTCCTTGGAAATCAATGGAGTCAACCATGAGTTCTTTGCAGGGGACACATCTCACCCTCAAACAAAGGACATTTACCGAGTTTTGGATTTGATAAACGAGAGGCTTCTCTCGGAGGGATATCAGCCTGACCTTTCACAGGCACCCTTAGTTGACGATGAAGATGAGGACCGAAAGCAAGATGCTCTCAGGCTGCATAGTGAGCGACTAGCAATTGCTTTCGGACTTCTACATGTGAAACCAGGCGAACCAATTCGCATATTCAAAAACCTTCGTGTCTGCAGTGACTGCCATGAAGTCACCAAACTGATCTCTAGAATCTTCAATGTTGAGATCATTGTAAGAGATCGAACTCGATTCCATCATTTCAAAGATGGACAGTGTTCATGCTCGGATTACTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_20272.p1 GENE.S_Transcript_20272~~S_Transcript_20272.p1 ORF type:complete len:595 (+),score=101.37,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|22,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|0.0026,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|20,PPR_2|PF13041.2|0.093,PPR_2|PF13041.2|3.7,DYW_deaminase|PF14432.2|3.7e-36,PPR|PF01535.16|20,PPR|PF01535.16|95,PPR|PF01535.16|0.16,PPR|PF01535.16|4e-05,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.00036,PPR|PF01535.16|0.48,PPR|PF01535.16|0.069,PPR|PF01535.16|22,PPR|PF01535.16|1.6e+03,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.16,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.94,PPR_3|PF13812.2|9.4,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|59,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|6.7e+02 S_Transcript_20272:169-1953(+)
MLLASTTTFHQPNLLTYLNQCSSITQLKQIHAQVIRTIPTDNPKDLLFLHSRLLHYTSFIDIDYSFKIFNQIHNPNSFIWNTLIRACASSPSHHKSLAFKLFHDMLCEGFVQLDKHTFPFVLKACAYLFAEDEGKQAHAYAVKLGFVSDVYVNNSLSHFYGSCGFLDCAQKVFDKMPERSVVSWNVMIDVLVQLGELDRALELFGLIQGLFEPDGYSLQSVLSACAGLGALGSGMWAHAYILRVCDVNLQSDVLVNNSLVEMYCKCGMLSLAKQVFDGMIKRDVNSWNSMILGLAMHGHVELAMEHFDHMTKVDGLRPNSITFVGILSACNHRGMVELGREYFDKMVKDYGIEPRLEHFGCMVDLLACAGLVDEALELVSNMPMKPDVVIWRSLLDACCKKNAGIELSEEVAKKILESEATCSGVYVLLSRVYASAARWNDVGSIRKLMTDKGITKEPGCSSLEINGVNHEFFAGDTSHPQTKDIYRVLDLINERLLSEGYQPDLSQAPLVDDEDEDRKQDALRLHSERLAIAFGLLHVKPGEPIRIFKNLRVCSDCHEVTKLISRIFNVEIIVRDRTRFHHFKDGQCSCSDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST