Transcript Information: S_Transcript_202761.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value0.0007
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0958294626251
Replicate 22.3360600707957
Replicate 32.2782203397389
Condition 2: 8 Hour
Replicate 12.1325390317133
Replicate 24.079572399009
Replicate 32.7585214547623
Condition 3: 24 Hour
Replicate 12.8269849223122
Replicate 21.8664315415816
Replicate 33.1156643088673


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_202761.p1 GENE.S_Transcript_202761~~S_Transcript_202761.p1 ORF type:internal len:170 (-),score=19.66,UBN2_3|PF14244.2|3.2e-09 S_Transcript_202761:3-509(-)
AGAAATGCGAGAATTAATTCAAAACCTCCAAAGATGGTAAATATTAAACAATTGTTTTATAATCTCTTATATGGTATCAGATACTTGATCCTTTTTCTCTACCAAAGTTCTTCATCAATGGCCAACCCCAACTCGTCATATCAAATTCCCAACCCCACTGATCCTTCCAAGCCTTTCACCTTTATCAATATTAACAATGCCATCAAACTTACTTCTAATAATTATCTATCATGGAAAATGCAACTTTCCGCTATTCTTATTGGTCATGATCTTTATTGTTTTGTTGATGGCTCCTGTCCAGCCCCTTCTCCCACCATTACTGCAGATGGTGTTGAGAAATCTAACCCAGCTCATGCATTCTGGCTTCGCCAAGACAAATTACTGTTCGGTGCTCTTGTTGGTACTCTCTCTTCCTCTCTTCTTCCTCTTGTTTCTCAGGCTCAAACCACAAAAGATGTCTGGGATATGCAAAACCCAGCCGTGGGCATATTAAACAATTGTTTTATA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_202761.p1 GENE.S_Transcript_202761~~S_Transcript_202761.p1 ORF type:internal len:170 (-),score=19.66,UBN2_3|PF14244.2|3.2e-09 S_Transcript_202761:3-509(-)
RNARINSKPPKMVNIKQLFYNLLYGIRYLILFLYQSSSSMANPNSSYQIPNPTDPSKPFTFININNAIKLTSNNYLSWKMQLSAILIGHDLYCFVDGSCPAPSPTITADGVEKSNPAHAFWLRQDKLLFGALVGTLSSSLLPLVSQAQTTKDVWDMQNPAVGILNNCFI

Click here to download the sequence:
Link to NCBI Protein BLAST