Transcript Information: S_Transcript_205659.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value6E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.80534529184865
Replicate 20.7586929008774
Replicate 30.72299584371749
Condition 2: 8 Hour
Replicate 10.77733541045946
Replicate 21.1693676042773
Replicate 30.8209679957902
Condition 3: 24 Hour
Replicate 11.0366554063625
Replicate 20.87288407721833
Replicate 31.0928396131515


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_205659.p1 GENE.S_Transcript_205659~~S_Transcript_205659.p1 ORF type:complete len:1454 (+),score=177.37,RVP_2|PF08284.7|7.8e-32,RVT_1|PF00078.23|5.2e-31,Retrotrans_gag|PF03732.13|8.4e-14,Retrotrans_gag|PF03732.13|2.5e+03,rve|PF00665.22|1.5e+04,rve|PF00665.22|6.5e-12,gag-asp_proteas|PF13975.2|2.7e-07 S_Transcript_205659:442-4803(+)
ATGAGTGACGAAACCCAAGCCCAGATTCTTGCTAGGATGAAAATGATGGAGGAACTATTACTGAAACCAAAGGGGGACCCTAACTATTACAACAGAATAGTCAAACTCAACCCACCAAAGTATGAAGGGGGACCTGACCCAACCATTCTTGAAACCTGGATAACGGAGTGGGAGACCATTTTCACAACCACCGAGTGTCCTGAAGAGCGGAGAGTGTCTATGATTGACTTTTACCTTAAGGGCGAGGCGGGCATTTGGTGGAGAGGAAAGAAAAGTGAGTTGAAAGCAAAGGAGGGTTTTGGATGGGATATGCTGGTGGAGCACTTAAGGGAGACCTTCTACCCTAACGCACTGAAGAGGAAAAAGAAAGCCGAGTTCGAGAGATTGATACAGGGAGATATGTCTGTGTCTGAGTACGCCTCTAAGTTCATCCAGCTGTCTAGGTTTGCTGAGAACCTGGTAGCTAAAGAGCAAGATAAGGTAGAGAGGTTTGAGGATGGCCTTACCTTCAAGCTCCAAGAGTTGGTGACTGGTCAATGCCAGACCTTTTCAGAAGTCCTCGATAAAGCGATCAACATGGAGAGGGTCCTGGAGAGAAGAAAGGAAGTTAATAACAAGAACAAGAAGAGGGAAACGGGACAACAAGCGGCGGAGGAGAATCCGCCTAAGAAATTGAGGAACGGGGGAAGCTCACACCACGGGGGTGGAGGCTTCCAAAAAGGTGGCAAAGGAGGAAACCAGGAAGGAGGGCAACAAGGAGGAGGAAACAATGGAGGAAGGAAGCCGAGCAACTGTAAGAAGTGCGGCAAGCCGTACCACCCGAAAACCAACCCCAGAGGAAACCTCTGGGAATGTAACGCTTGTGGCAAGAAAGGCCACAGAGCTTTCGAGTGTTGGAGTAACCCACAAGATTCTGGAAATGGGGGAAACAACAGGAATAATGGAGGAAACAGGGGGACTCAGAATGGTGGAAACAACCGTGGGTATCAAGGCCAGAACCAGAGGAACAACAACTACAACAACAATGGCAATGCAGGGGGTTACCAGAGAGGAAATCAGCAACAGTCTAACCAGCAAGTAGGTCCACACCAGAATGCTGGAAATGAAGGAGTCAACAGCTACAACAACCAGTCTCACTCCAACAACAATAACAACAAGGGACGCATTTTTGTCATGAGCAGAGCTGAGGCTGAAAACAATCCTGACGTTGTGGCTGGTACATTTCTTGCTAAATCTATCCCTGCTTACATTCTCTTTGATTCGGGAGCATCTCATTCGTTCATTTCCTCTACTTTTGTACATAAACACAATATTGCACCTACTTCTGTTTGTGATGCTAGTATCTCAATGCCTACTGGGGTAGTAGTTAACTGCACTAGACTTTTTGAGAATATTCCCATAAACATAGCTGGGTCAGAATTACATGCCAACCTGATACAGTTTGACCTATTGGGCTTTGACATTATATTGGGAATGGATTGGTTAGCGAGACATAGAGCCAAGATTGATTGTAGGCAACAACGTATCTTTCTAAGAGGTCCAAAGGGAAACAAAATCTCTTACTGTGGGATAGTTATGAAACCGGGAGTTAACCTTATCTCATTCAAGAAGGGCCAACCTGTATATCTTTGTCAATCCATGACTTCAACCCAAGGGCAACCTGCAACTCCACAAATTCCAATAGTCTCAGAATACCCAGATGTATTTCCCGAGGAAATCACCGGAATGCCACCTGAGAGGATCATTAGTTTCACCATTGACTTGATTCCGGGAGCTTCACCTATCTCCAAAGCACCCTATAGGATGGCACCCGCTGAGTTGCAAGAACTTAAAAAGCAACTAGATGACCTGATGTCTAAGGGCTTTATCAAGCATAGTACTTCCCCGTGGGGAGCACCGGTGTTGTTTGTGAGGAAGAAAGACGGAAGTATGAGACTCTGCATCGACTACAGGGAGTTGAACAAGGTCACTATAAAGAACAAATACCCTTTGCCTAGGATCGAAGACCTTTTCGATCAGTTGCAAGGAGCAGGAGTGTTTTCTAAGATTGATCTACGATCTGGTTATCATCAATTGAGGGTTAGTGAAGTAGATCAACCCAAAACTGCTTTCAGGACTAGGTTTGGACATTTTGAGTTCACGGTAATGCCGTTTGGACTAACCAATGCACCTGCCGTATTTATGGATCTCATGAACCGCATTTTTCAGCCATACCTAGATACTTTCGTCGTTGTTTTCATAGACGACATTCTCGTGTACTCTAAGTCTAGGGAGGACCACGAGCAACATCTTAGGACTGTTCTAGAAGTGTTGAGAGAAAATCAGCTGTATGCCAAGCTATCGAAGTGTGAATTCTGGCTCGACAAAGTGGCTTTTCTGGGTCACATAGTCACCAAAGAGGGTATAGCTGTCGATCCTGAGAAGTTTAGGGCAGTAACTGATTGGCCAAGACCAACTAATGTAACGGAAATTCGTAGCTTCCTAGGGCTAGCAGGGTACTACCGACGTTTTGTCGAGAATTTCTCTAGGATTGCGAAACCACTCACTAGTCTGATGAAGAAAGGAGTCAAGTACATTTGGACAGACGAGTGTGAGAAAGCTTTTCAGGAATTGAAGAAGAGATTGACTTCTGCACCCATTTTAACCTTGCCTTGTGGGACAGAAGGATTCGTGGTTTACAGTGACGCTTCTAAACATGGGTTAGGATGTGTCCTTATGCAGCATGGGAAAGTAGTGGCCTACGCATCTCGACAGTTGAAACCTTATGAGCAGAATTACCCAACTCATGACCTGGAGTTAGCTGCCGTAGTTTTTGCCTTGAAACTCTGGAGACACTACTTGTTTGGGACATCTTGTCAGATCTATACCGACCACAAGAGTCTTAAGTACATTTTCACGCAAAAGGAGATCAACATGAGGCAGCGCAGATGGTTAGAACTTATAAAGGATTACGATCTCGACATACAGTACCATGAGGGAAAGGCGAATGTAATTGCCGATGCTCTGAGTCGAAAGAGCAGACACACACTGAATACTGCGATCGTCCTACCTCAGGAATTGTATGAAGAGTTTCGCAAGTTGGAAATTGAAATGGTCCATCAAGGTGATACTCAAGTAGTTTTGAACGCTCTGGTCGCACAACCATCCATACTGGAAGAAATCAAGGGTAAGCAAGTCGGGGACATGAAGCTCGAAAGAGTCAAAAGCAAGATGCCAGATGGAGCCAAAGACTTTACCATTGGGAATGATGGAATCATGCGATTTCGTGGAAGGATCTGTTTGCCTAACGACAGGGAGCTGAAAAGAAAGATCATGGAAGAAGCTCACAACACACCCTACTCAGTTCACCCAGGAGGGGACAAATTATACAAGGATTTACATCAAAACTTTTGGTGGAAGGGTATGAAGAAAGAAATTGCTGAGTTCGTGTCACGATGTCTTACTTGTCAGCGTGTCAAGGGAGAACACCAACGACCAGGAGGGTTACTACAACCACTGGAAGTACCACAGTGGAAGTGGGATTCTATTTCCATGGACTTTATTGTAGGTTTGCCTACCACACAGAAAGGCAACGACACTATTTGGGTAGTGGTAGATCGATTGACCAAGGTTGCTCACTTTATACCCATGAAGAATACATGGTCAATGGATCAGATGGCCGATGCATATGTGAAGAACGTAGTACGTCTACACGGGATTCCGAGGAGTATCGTGTCAGATCGAGACTCACGATTCCTGTCTCATTTCTGGAAGACTCTTCAAGAAGCTTTTGGTACTAAACTGAATATGAGTACAGCTTTCCATCCTGCATCCGATGGACAAACCGAGCGCACCATTCAAACGCTCGAAGACATGCTGAGAGCATGTGTGATGGATTTCCAAGGCTCGTGGGATAAACATTTGACACTGATCGAGTTTTCCTACAATAATAGCCATCATGCCAGTATTGGGCAAGAACCATTTGAAGCTTTATATGGAAGAAAATGTCGTAGTCCTATTTGTTGGAATGACATAAGTGAGACAGTAGTCTTAGGTCCACAGTTAATTCAAGACGCCATCGAGCAGGTCCGACTAATCCAAGAAAGGATGAAAGCGGCCCAGGATCGACAGAAAAGCTATGCTGACAATGGACGTCGATTTAAAGAGTATGCCGTAGGTGACAAAGTTTTCTTACGTGTTTCGCCCACTAAAGGCATTATGCGATTTGGCCGTCGCGGCAAGTTGAGTCCGAAGTACATAGGATCTTATGAGATTACGGACAGAGTAGGCGAAGTTGCATATAAGTTAGATTTGCCCACTGAATTGGCAAAAGTACACAATGTGTTTCACGTCTCTCAACTAAGACGATACGGATCAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_205659.p1 GENE.S_Transcript_205659~~S_Transcript_205659.p1 ORF type:complete len:1454 (+),score=177.37,RVP_2|PF08284.7|7.8e-32,RVT_1|PF00078.23|5.2e-31,Retrotrans_gag|PF03732.13|8.4e-14,Retrotrans_gag|PF03732.13|2.5e+03,rve|PF00665.22|1.5e+04,rve|PF00665.22|6.5e-12,gag-asp_proteas|PF13975.2|2.7e-07 S_Transcript_205659:442-4803(+)
MSDETQAQILARMKMMEELLLKPKGDPNYYNRIVKLNPPKYEGGPDPTILETWITEWETIFTTTECPEERRVSMIDFYLKGEAGIWWRGKKSELKAKEGFGWDMLVEHLRETFYPNALKRKKKAEFERLIQGDMSVSEYASKFIQLSRFAENLVAKEQDKVERFEDGLTFKLQELVTGQCQTFSEVLDKAINMERVLERRKEVNNKNKKRETGQQAAEENPPKKLRNGGSSHHGGGGFQKGGKGGNQEGGQQGGGNNGGRKPSNCKKCGKPYHPKTNPRGNLWECNACGKKGHRAFECWSNPQDSGNGGNNRNNGGNRGTQNGGNNRGYQGQNQRNNNYNNNGNAGGYQRGNQQQSNQQVGPHQNAGNEGVNSYNNQSHSNNNNNKGRIFVMSRAEAENNPDVVAGTFLAKSIPAYILFDSGASHSFISSTFVHKHNIAPTSVCDASISMPTGVVVNCTRLFENIPINIAGSELHANLIQFDLLGFDIILGMDWLARHRAKIDCRQQRIFLRGPKGNKISYCGIVMKPGVNLISFKKGQPVYLCQSMTSTQGQPATPQIPIVSEYPDVFPEEITGMPPERIISFTIDLIPGASPISKAPYRMAPAELQELKKQLDDLMSKGFIKHSTSPWGAPVLFVRKKDGSMRLCIDYRELNKVTIKNKYPLPRIEDLFDQLQGAGVFSKIDLRSGYHQLRVSEVDQPKTAFRTRFGHFEFTVMPFGLTNAPAVFMDLMNRIFQPYLDTFVVVFIDDILVYSKSREDHEQHLRTVLEVLRENQLYAKLSKCEFWLDKVAFLGHIVTKEGIAVDPEKFRAVTDWPRPTNVTEIRSFLGLAGYYRRFVENFSRIAKPLTSLMKKGVKYIWTDECEKAFQELKKRLTSAPILTLPCGTEGFVVYSDASKHGLGCVLMQHGKVVAYASRQLKPYEQNYPTHDLELAAVVFALKLWRHYLFGTSCQIYTDHKSLKYIFTQKEINMRQRRWLELIKDYDLDIQYHEGKANVIADALSRKSRHTLNTAIVLPQELYEEFRKLEIEMVHQGDTQVVLNALVAQPSILEEIKGKQVGDMKLERVKSKMPDGAKDFTIGNDGIMRFRGRICLPNDRELKRKIMEEAHNTPYSVHPGGDKLYKDLHQNFWWKGMKKEIAEFVSRCLTCQRVKGEHQRPGGLLQPLEVPQWKWDSISMDFIVGLPTTQKGNDTIWVVVDRLTKVAHFIPMKNTWSMDQMADAYVKNVVRLHGIPRSIVSDRDSRFLSHFWKTLQEAFGTKLNMSTAFHPASDGQTERTIQTLEDMLRACVMDFQGSWDKHLTLIEFSYNNSHHASIGQEPFEALYGRKCRSPICWNDISETVVLGPQLIQDAIEQVRLIQERMKAAQDRQKSYADNGRRFKEYAVGDKVFLRVSPTKGIMRFGRRGKLSPKYIGSYEITDRVGEVAYKLDLPTELAKVHNVFHVSQLRRYGSN*

Click here to download the sequence:
Link to NCBI Protein BLAST