Transcript Information: S_Transcript_206536.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.24112338314224
Replicate 31.108579764588
Condition 2: 8 Hour
Replicate 11.2818540627785
Replicate 21.1002548511341
Replicate 30.81536029090093
Condition 3: 24 Hour
Replicate 11.0743385323243
Replicate 20.86692175428651
Replicate 31.1026030341034


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_206536.p2 GENE.S_Transcript_206536~~S_Transcript_206536.p2 ORF type:complete len:183 (+),score=35.74,UBN2_3|PF14244.2|3.8e-45,Retrotrans_gag|PF03732.13|4.8e-10 S_Transcript_206536:345-893(+)
ATGGCAGAATCAAGTTCAAGTTCTTCTTCTGCTGTGATTGATGTACATAGTGAGCTATACATTCATCATGGAGATGTCAGCAACAACTTCATGCTTGCGACACAGAAACTTAATGGAGATAATTTTGCTAAGTGGAAGCGTTCTGCAGAGATTGCCTTGAGTGCTAAGAACAAATTAGGTTTTGTTCAAGGTACATGTCCAAAACCTTCTTCAACCTCTCCTCTCTTACCTTATTGGGAGAGATGCAATAATCTGGTAATCACTTGGATACTTCATTCTGTTGATTCTGAAATTGGTAAAAGTATTCTGTATTATAACACTGCTTCTAAGATTTGGAATGAGTTTATTGATCGTTATGGTCAATCCAATGCACCAAGGAAGTATCAAGCACATAAACACATTAATGAAATTGAACAAGGAAACAGTTCTGTAACTGAATATTATACTGCCTTAAAGACCTCTTGGGATGAATATATGTCATTGATCAATCTACCAGCTTGTACATGTGGTGCTGGAAATGCTTTTTTGGGGATATTACATGAGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_206536.p2 GENE.S_Transcript_206536~~S_Transcript_206536.p2 ORF type:complete len:183 (+),score=35.74,UBN2_3|PF14244.2|3.8e-45,Retrotrans_gag|PF03732.13|4.8e-10 S_Transcript_206536:345-893(+)
MAESSSSSSSAVIDVHSELYIHHGDVSNNFMLATQKLNGDNFAKWKRSAEIALSAKNKLGFVQGTCPKPSSTSPLLPYWERCNNLVITWILHSVDSEIGKSILYYNTASKIWNEFIDRYGQSNAPRKYQAHKHINEIEQGNSSVTEYYTALKTSWDEYMSLINLPACTCGAGNAFLGILHEQ*

Click here to download the sequence:
Link to NCBI Protein BLAST