Transcript Information: S_Transcript_206539.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0004
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24756280218773
Replicate 20.71832338094234
Replicate 30.6004611748149
Condition 2: 8 Hour
Replicate 10.39675144776061
Replicate 20.52027554976108
Replicate 30.29743043169741
Condition 3: 24 Hour
Replicate 10.9144369833272
Replicate 20.42165230839716
Replicate 30.9384946755392


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_206539.p1 GENE.S_Transcript_206539~~S_Transcript_206539.p1 ORF type:3prime_partial len:215 (+),score=24.18,gag_pre-integrs|PF13976.2|5.4e-07 S_Transcript_206539:1371-2012(+)
ATGCTCAAGCTGCTTGTGACACTGTTGTTCCTTCAGTGGGTTCAAATTCTGCTTCTACAGCTTCTAGTACTCCTGTTCTCACTCAAGATCAGATTCAACAGCTTATTTCTTTGGTTTCACAGCACAGTTTGGACTCTCTTTCTAGTACTTCTTCTACTTCACAGTCAGGTCAATCTTCAGTTTTCTTGGCAGGTGCCCTCAATGAGGCAGAATCTGGTCCTTGGTAAAGCACATGATGGATTGTACTTTGTTGATTCAAGTATGCAGAAATTATCCCCTGATTCTGCACAATCTGTCTATCATGCTAATACTGTTCAATCCAGCTCTTTGTTATGGCATTGTAGGCTTGGACATATGCCTTTTGACAAAATAAATTGTATAGATTCCATTTCTTGCACTTCCTCCCCCCATGTTATCAGTGATGTATGTCCTAAGGCTAGACTGACTAGGACTTCTTTTCCTGTTACCCACATACAAACTCATTCAATTTTTGAGATGATTCATGTTGATCTTTGGGGTCCTTATGCTAATAGTACATATAATGGATTCAAGTATTTTTTGACCATTGTGGATGATTATTCCAGATCCACATGGGTGCATTTATTAGCTCGCAAGAGTGCTTCATTTTCTGTTCTCAAAAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_206539.p1 GENE.S_Transcript_206539~~S_Transcript_206539.p1 ORF type:3prime_partial len:215 (+),score=24.18,gag_pre-integrs|PF13976.2|5.4e-07 S_Transcript_206539:1371-2012(+)
MLKLLVTLLFLQWVQILLLQLLVLLFSLKIRFNSLFLWFHSTVWTLFLVLLLLHSQVNLQFSWQVPSMRQNLVLGKAHDGLYFVDSSMQKLSPDSAQSVYHANTVQSSSLLWHCRLGHMPFDKINCIDSISCTSSPHVISDVCPKARLTRTSFPVTHIQTHSIFEMIHVDLWGPYANSTYNGFKYFLTIVDDYSRSTWVHLLARKSASFSVLKK

Click here to download the sequence:
Link to NCBI Protein BLAST