Transcript Information: S_Transcript_206616.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.71157757313317
Replicate 20.47193132743347
Replicate 30.59174554278932
Condition 2: 8 Hour
Replicate 10.91231616329981
Replicate 20.83744887956196
Replicate 31.3678618783945
Condition 3: 24 Hour
Replicate 10.46727023509292
Replicate 20.60598426674726
Replicate 32.8324220989703


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_206616.p2 GENE.S_Transcript_206616~~S_Transcript_206616.p2 ORF type:complete len:187 (+),score=30.84,UBN2_3|PF14244.2|3.8e-39 S_Transcript_206616:149-709(+)
ATGACAAACAACAGTGATGGAACAAACAAAGATGGGGGGAACAATCGTGAGGGAATGAAAACAAAAACCATTGATATTACCTCACCTTATTATGTTCATCCGTCTGAAACACCAGGACTCGTCATTTGCGGAGTCTCTCTGAAAGGTGAATCAAATTACAGAGAATGGTCCATTGCTATGTGTCATGCTTTGAGGGCTAAACGAAATTTGGGATTTATTGATGGTTCGATCGCAAAGCCCATTGATAACCCAAATGATATTGAAGATTTGTCGTTGGTGAATAGCTTGCTAGTTGGATGGATAATAATGTCAGTAGATCCATCCATTCGACCACTGATTGGGTATATGGACACTGCAAAGGAGTTGTGGGATGACATAAAAGCACGTTTCTCTATTGGTGATGCATTATGTGTTTATCAGTTACGAGAGGCCATTAAAGATTGCACGCAGCAAGGTCAAAGTGTGACATCTTACTTTGGCAAACTTAAGATGTTGTGGGATGAGTTGCTTGGGTATTTGAAGACACCTACATGCACTTGTGGTGGTTGTAAATGTGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_206616.p2 GENE.S_Transcript_206616~~S_Transcript_206616.p2 ORF type:complete len:187 (+),score=30.84,UBN2_3|PF14244.2|3.8e-39 S_Transcript_206616:149-709(+)
MTNNSDGTNKDGGNNREGMKTKTIDITSPYYVHPSETPGLVICGVSLKGESNYREWSIAMCHALRAKRNLGFIDGSIAKPIDNPNDIEDLSLVNSLLVGWIIMSVDPSIRPLIGYMDTAKELWDDIKARFSIGDALCVYQLREAIKDCTQQGQSVTSYFGKLKMLWDELLGYLKTPTCTCGGCKCV*

Click here to download the sequence:
Link to NCBI Protein BLAST