Transcript Information: S_Transcript_206696.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8841062821367
Replicate 20.97622962643871
Replicate 31.1424703768602
Condition 2: 8 Hour
Replicate 11.3210418780525
Replicate 20.79192384565404
Replicate 32.0749940146442
Condition 3: 24 Hour
Replicate 10.57995265904232
Replicate 20.60169411264639
Replicate 31.5624275295205


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_206696.p1 GENE.S_Transcript_206696~~S_Transcript_206696.p1 ORF type:5prime_partial len:113 (-),score=25.24,DDE_Tnp_4|PF13359.2|1e-07 S_Transcript_206696:86-424(-)
CATGCATCGCTTCGTAATGTTATTAAACGGGCATTTGGAGTATGGAAAAATAGGTGGAGGATATTGTTTAAGATGCCAAGTTACAAATTCTCTACACAATGCAAAATTGTGGCAGCTACTATGGCTCTACACAATTTTATCAAAAAGTATACAATTAATGATGAAGAGTTTGACAAGTTTGATGAAGACCCCAATTACATGCCCCATGTAGATGGTGAACATGAAGAAGAGGAAAGCAACAGAGATGATAGTTCATATGAGCATGGTGGAGCATTGGATGATCGTGATATGGCTATTGTTCGTAATGCAATTGTTAGATCTTTAATGCATGGAAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_206696.p1 GENE.S_Transcript_206696~~S_Transcript_206696.p1 ORF type:5prime_partial len:113 (-),score=25.24,DDE_Tnp_4|PF13359.2|1e-07 S_Transcript_206696:86-424(-)
HASLRNVIKRAFGVWKNRWRILFKMPSYKFSTQCKIVAATMALHNFIKKYTINDEEFDKFDEDPNYMPHVDGEHEEEESNRDDSSYEHGGALDDRDMAIVRNAIVRSLMHGK*

Click here to download the sequence:
Link to NCBI Protein BLAST