Transcript Information: S_Transcript_2072.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value5E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.043545010879
Replicate 226.175249072014
Replicate 320.347401522965
Condition 2: 8 Hour
Replicate 135.399073599473
Replicate 231.839028920518
Replicate 346.068003136206
Condition 3: 24 Hour
Replicate 112.545676160845
Replicate 220.094865679784
Replicate 312.706319599555


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_2072.p1 GENE.S_Transcript_2072~~S_Transcript_2072.p1 ORF type:5prime_partial len:397 (+),score=37.43,LRR_8|PF13855.2|4.7e-08,LRR_8|PF13855.2|1.5e-10,LRR_8|PF13855.2|2.6e-11,LRR_8|PF13855.2|1,LRR_8|PF13855.2|24,LRR_8|PF13855.2|0.01,LRR_8|PF13855.2|8.7e+03,LRR_4|PF12799.3|4e+02,LRR_4|PF12799.3|2.3,LRR_4|PF12799.3|0.00028,LRR_4|PF12799.3|1.5e-06,LRR_4|PF12799.3|2e-06,LRR_4|PF12799.3|0.0034,LRR_4|PF12799.3|4.7,LRR_4|PF12799.3|11,LRR_4|PF12799.3|1.4,LRR_1|PF00560.29|1.5e+04,LRR_1|PF00560.29|0.69,LRR_1|PF00560.29|0.14,LRR_1|PF00560.29|0.48,LRR_1|PF00560.29|0.084,LRR_1|PF00560.29|22,LRR_1|PF00560.29|8.6e+02,LRR_1|PF00560.29|6e+02,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|77,LRRNT_2|PF08263.8|6e-09 S_Transcript_2072:1-1191(+)
CCGGGGATACAAACAAAAACCATATCTTTTCTACTAAAAATGCAAGCCATGAAACCCATTTTGGTCCTCCCATTTCTTCTCTTCCTTTTCTTATCTTTCAATCCTACTTCAACTTCAGCTGAGAAATGTGACCCAAATGACAAGAAAGTTCTCCTCCAAATCAAGGCTGATTTCGGAAATGATGAAATTGCTTTCATTGGTTGGGATAAAAACACTGAATGTTGTAGCTGGTTTGGTGTACAGTGTAATAGCCACAACCGTGTAACTTCACTTGGAATTCTAATGTCACCCGATGTTACATACCCCATTTCACCTGCCATAGGCTACCTCCCTTATCTCGAGTCTCTTAGACTCACTTTCTTTTTCAAACTCACCGGTCCAATCCCCGAGTCATTTGCTAGGCTAACCCACCTCAAAAGCCTTGACCTTGGTGGTCAAAACTTGACCGGCCCGATTCCTGCTTTTTTGGGCCAGCTCAAGAAACTCACCTATCTCGACCTCTCTAGCAACCGAATCCCTGGTTCAATCCCTTCTTCGTTGGGCCAACTCACGAGCCTTACTTATGTGGACCTTAGCTCGAACCAACTCACAGGTTCAATCCCAAGCACTTTCGGCCAACTTACCGGCCTAGAGAAACTCGACCTCTCTTTTAATAAACTTTCGGGGCCGATCCCTGCCTCTCTTTCTCATTTGACCAAAGTCAATCGCCTTGACATTCGAGCAAACCAGCTCACTGGTTCAATCCCGGCTAGCTTCGGCTCATTTAAAAACCCTCAAATGCTACTCTTTCTAGGTAACAACCGGTTGTCCGGTCCCATTCCAAAATCAGTTGGCCAGGCTAACATAAATCTGTTAGGTTTGTCCTCTAACAAGTTCACTGGGGATGCTTCCTTTTTGTTTGGAAGGGACAAAACTGCATTGGAAACCATATACCTTGATGATAATCATTTCCATTTCGACTTCTCGAAGGTGGAATTCCCAATTGGCCTAAGGAACCTTGATATCCGAAACAACAAGATATATGGATCACTTCCAAAACAGCTAGGCCAGCTGCCATTGACGTATATTGATGCAAGTCACAACCAGCTTTGTGGCCCAATCCCGACGGGCCGGCGGCTGAAACGGTTCAGCCCGGACAAATTCACCCACAACAAGTGCTTATGTGGTCTCCCCTTACCACCTTGCAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_2072.p1 GENE.S_Transcript_2072~~S_Transcript_2072.p1 ORF type:5prime_partial len:397 (+),score=37.43,LRR_8|PF13855.2|4.7e-08,LRR_8|PF13855.2|1.5e-10,LRR_8|PF13855.2|2.6e-11,LRR_8|PF13855.2|1,LRR_8|PF13855.2|24,LRR_8|PF13855.2|0.01,LRR_8|PF13855.2|8.7e+03,LRR_4|PF12799.3|4e+02,LRR_4|PF12799.3|2.3,LRR_4|PF12799.3|0.00028,LRR_4|PF12799.3|1.5e-06,LRR_4|PF12799.3|2e-06,LRR_4|PF12799.3|0.0034,LRR_4|PF12799.3|4.7,LRR_4|PF12799.3|11,LRR_4|PF12799.3|1.4,LRR_1|PF00560.29|1.5e+04,LRR_1|PF00560.29|0.69,LRR_1|PF00560.29|0.14,LRR_1|PF00560.29|0.48,LRR_1|PF00560.29|0.084,LRR_1|PF00560.29|22,LRR_1|PF00560.29|8.6e+02,LRR_1|PF00560.29|6e+02,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|77,LRRNT_2|PF08263.8|6e-09 S_Transcript_2072:1-1191(+)
PGIQTKTISFLLKMQAMKPILVLPFLLFLFLSFNPTSTSAEKCDPNDKKVLLQIKADFGNDEIAFIGWDKNTECCSWFGVQCNSHNRVTSLGILMSPDVTYPISPAIGYLPYLESLRLTFFFKLTGPIPESFARLTHLKSLDLGGQNLTGPIPAFLGQLKKLTYLDLSSNRIPGSIPSSLGQLTSLTYVDLSSNQLTGSIPSTFGQLTGLEKLDLSFNKLSGPIPASLSHLTKVNRLDIRANQLTGSIPASFGSFKNPQMLLFLGNNRLSGPIPKSVGQANINLLGLSSNKFTGDASFLFGRDKTALETIYLDDNHFHFDFSKVEFPIGLRNLDIRNNKIYGSLPKQLGQLPLTYIDASHNQLCGPIPTGRRLKRFSPDKFTHNKCLCGLPLPPCK*

Click here to download the sequence:
Link to NCBI Protein BLAST