Transcript Information: S_Transcript_207251.p1


Annotated TAIR IDATMG00820.1
Annotated Gene NameReverse transcriptase (RNA-dependent DNA polymerase)
Annotated Gene Symbol(s)ORF170
Annotation TypeHomolog
Chromosome PositionchrM:228573-229085 | Reverse length=170
E-Value4E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.98414796555367
Replicate 21.0538466506671
Replicate 30.9093490827045
Condition 2: 8 Hour
Replicate 11.2157772599906
Replicate 21.7235630693164
Replicate 31.1823890813241
Condition 3: 24 Hour
Replicate 11.0097788978703
Replicate 21.2920817077425
Replicate 30.85498455610563


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_207251.p1 GENE.S_Transcript_207251~~S_Transcript_207251.p1 ORF type:internal len:649 (+),score=94.15,rve|PF00665.22|8.1e-26,gag_pre-integrs|PF13976.2|8.4e-15,RVT_2|PF07727.10|5e-11 S_Transcript_207251:1-1944(+)
AACAACCATTGGTACCTTGATAATGGTTGTTCCAAGCATATGACCGGTGACAAATCCAACTTCCTCTCCCTAACGGCCATCAAGGGTAGGAGTGTGACTTTCGGTGACAACAAGAAAGGTGAAATTGTAGGTGTTGGAAAAGTGGGAATCTCACCGTCACACTCCATTGACAATGTTTATATGGTAAAAGGTTTGAAGCACAATCTATTAAGTATCTCTCAACTTTGTGACAAGGGTAACCATGTTAAGTTCACCGCAAATTCATGTTTGATTATGAATAGAGATGGTGACACTATTCTTGAAGGAATTCGTCACAATAATGTTTATACGGCTTTATTATCTAGTCTTTCGGAGAATAGTCTAACGTGTCTAAGTGTACTTGAAGATGACCCTCTTTTATGGCATAGACGATTGGGCCATGCGAGCTTGTATTTATTGAAAAAATTGGTCTCACAACACTTGGTAGAAGGACTCCCATCTATCAAGTTTCAAGATCAAAAAGTATGTGATGCATGTGCTAAAGGTAAGCAAGTAAGGTCATCCTTCAAGTCAAAGAACATGGTGAGCACTTCTCGACCTCTTGAACTAATACACATGGATCTTTGTGGCCCCATGACTGTGACAAGTCGTGGAGGAAAAAGATATGTGCATGTACTTGTTGATGATTACTCTAGATTCACTTGGACAATTTTTCTTGCAACTAAAGATGAAACCTTTGACAAATTTGTTGCTCTTGTGAAGAAACTGCAGAACAGAACTGGATTCCAGCTCCTGGCCATCCGAACTGATCATGGCACCGAGTTTGATAATGCCAAATTCATTGCTTATTGTGATGAACATGGTGTGGATCACAACTTCTTAGCCCCTAGGACTCCTCAACAAAACGGGGTCGTCGAAAGGAAAAACCGTACTTTGGAAGAGATGGCTAGAACTATGTTGTTAGCTAGTCCTTTACCAAAGAACTTTTGGGCGGAAGCGGTTAACACCGCATGTTATATAATCAATCGTGCCATGATACGTCCTATATTCAAGAAAATCCCATATGAACTTTTTAAAGGAAGAAAACCCAATATCATGCATTTAAGAATTTTCGGTTGTAAATGTTTTGTGCATAATAATGGGAAAAATAATTTGGGAAAATTTGATGCTAGGAGTGATGAAGCTATTTTTCTTGGATATTCTTCACATAGTAAAGCTTACAAGGTGTATAATCAAAGGACAATGTTAGTTGAAGAAAGTGTTCATGTGATTTTTTATGAGGTTGATGCTTTTGCTCGTAGGTATCCGGAAGATGATGAGTTCATAATTGGATTGTACCAAAGGGGAGAAGCAGAAGTCAGCACATATCCACAGCAAGGTGAAGGAGAATTGGATCCAAATGTCGAAACTCATGACAAGGAGGCCTCGGACTTAGGGGGAACAGCTCCTGGAAGGTCAGAACCTGGTTCTGACACTCTTGAGTTAGGCCCAGAAGCGTATGGAGCAGATCTTGAACGTGATGAACCTGGAACTAGTAGCCTGGAATGTTCTCCATCTGAGGCACCTGCTGCTCCAAGGGATCCAAATCAGGAAGTAGTGGATATAAATGGACAAATGGTTGCAGTTAGAACCAATTGGAAACATAAGAGTTCTCATGAACTCAAAAACATTTTGAGTGATATTTCCAAAGGGGTTCAAACTCGATCACGTGTCCAAAACTTTTGTGCCTTCTTTTCATTTCTTTCCTTATCGGAACCATCTAATTATTTGGAAGCTTTGCAGGATAGTGACTGGATCATAGCTATGCAAGAAGAGCTAAACCAATTTGAAAGAAACCAAGTGTGGCATTTGGTTCCTAGACCATTGGAACACAATGTGATAGGAACCAAATGGATTCTTCGAAACAAGCTGGATGAAGAGGGCTTTGTTGTTAGAAACAAAGCAAGACTAGTGGCTCAAGGGTAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_207251.p1 GENE.S_Transcript_207251~~S_Transcript_207251.p1 ORF type:internal len:649 (+),score=94.15,rve|PF00665.22|8.1e-26,gag_pre-integrs|PF13976.2|8.4e-15,RVT_2|PF07727.10|5e-11 S_Transcript_207251:1-1944(+)
NNHWYLDNGCSKHMTGDKSNFLSLTAIKGRSVTFGDNKKGEIVGVGKVGISPSHSIDNVYMVKGLKHNLLSISQLCDKGNHVKFTANSCLIMNRDGDTILEGIRHNNVYTALLSSLSENSLTCLSVLEDDPLLWHRRLGHASLYLLKKLVSQHLVEGLPSIKFQDQKVCDACAKGKQVRSSFKSKNMVSTSRPLELIHMDLCGPMTVTSRGGKRYVHVLVDDYSRFTWTIFLATKDETFDKFVALVKKLQNRTGFQLLAIRTDHGTEFDNAKFIAYCDEHGVDHNFLAPRTPQQNGVVERKNRTLEEMARTMLLASPLPKNFWAEAVNTACYIINRAMIRPIFKKIPYELFKGRKPNIMHLRIFGCKCFVHNNGKNNLGKFDARSDEAIFLGYSSHSKAYKVYNQRTMLVEESVHVIFYEVDAFARRYPEDDEFIIGLYQRGEAEVSTYPQQGEGELDPNVETHDKEASDLGGTAPGRSEPGSDTLELGPEAYGADLERDEPGTSSLECSPSEAPAAPRDPNQEVVDINGQMVAVRTNWKHKSSHELKNILSDISKGVQTRSRVQNFCAFFSFLSLSEPSNYLEALQDSDWIIAMQEELNQFERNQVWHLVPRPLEHNVIGTKWILRNKLDEEGFVVRNKARLVAQGY

Click here to download the sequence:
Link to NCBI Protein BLAST