Transcript Information: S_Transcript_211071.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3808047171728
Replicate 24.3838116058906
Replicate 34.5055544178177
Condition 2: 8 Hour
Replicate 14.3067563506913
Replicate 23.7893684992371
Replicate 34.6519927997842
Condition 3: 24 Hour
Replicate 15.4790098657191
Replicate 24.4294094286021
Replicate 33.2041033609105


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_211071.p1 GENE.S_Transcript_211071~~S_Transcript_211071.p1 ORF type:complete len:307 (-),score=44.53,UBN2_3|PF14244.2|2.2e-11 S_Transcript_211071:83-1003(-)
ATGTTAGTAGCTTGGATCAAAAATACTTTAGATAATGCAGTGCTTGCCAGTGTGGGTCGTATTGATGATTCTAAAGTCTTATGGGACAATTTAAAGTCTTGTTTTTCAATTAAGAACGGTGCCAAACAGTATCAGTTGTGGGCTGATCTTGTGGAGACTAAGCAACGTGGCATGTCTGTTATGTCTTATTATACTAAACTCTTGGCTATTTTGGAGGAAATAGCTGTGCATGCACCGACGGACGAGCCAAAATCCAATTCTTGGTTTGAGGAACTCAAAACTTACCTGTTTCTCATGGGATTGGACTCTGCTAAATATGGGCATCCTCGGACTAACATTCTTGGTAAAGAACCTTTCCCCTTTTTTTCTAATGCCTATTCTCAGGTTGTGCAAGAAGAACGCCATCAGTCCATAGCTTCTGTCGATGAATCAAGTACGGCTGTTGGTTTTGCTGCTCAAGCTAGCACCCGTGGCAGGGGGACTGCAAGTTTTCAATCCAGTCTTCAGTCTGCACCAACATCTCAAGTTGCATCCAATTCCTCTTTTGAGCAACAAACTGGTAATACTCGAAACCGACCTTATTGCTCGTATTGCAATCGCTTTGGACATGTTTATGATACTTGTTATGAGCGCACTGGCAATTATCCACCTGGATGGACTCCTCGTGGTCGAGGAAGAGGACGTGGCCAAGGCAACAATCAGGGTGTGCCACGTTCAGGACACCATCATCCCGCCTCAGTGGCAGCAATACAAAGTGGTGGAGTAACCACTGACCATACAGTAGCAGCAACTCAATCTATGACTCCCATTATACCTGGACTTTCAAATGACGAAATTCAGAAATTGGTTACTATGTTGCGTTCTCCTTCCCCTTCTACCGGTTCTGAAAAGCTTTCTGGTAAGCATAATGTCTTTAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_211071.p1 GENE.S_Transcript_211071~~S_Transcript_211071.p1 ORF type:complete len:307 (-),score=44.53,UBN2_3|PF14244.2|2.2e-11 S_Transcript_211071:83-1003(-)
MLVAWIKNTLDNAVLASVGRIDDSKVLWDNLKSCFSIKNGAKQYQLWADLVETKQRGMSVMSYYTKLLAILEEIAVHAPTDEPKSNSWFEELKTYLFLMGLDSAKYGHPRTNILGKEPFPFFSNAYSQVVQEERHQSIASVDESSTAVGFAAQASTRGRGTASFQSSLQSAPTSQVASNSSFEQQTGNTRNRPYCSYCNRFGHVYDTCYERTGNYPPGWTPRGRGRGRGQGNNQGVPRSGHHHPASVAAIQSGGVTTDHTVAATQSMTPIIPGLSNDEIQKLVTMLRSPSPSTGSEKLSGKHNVFN*

Click here to download the sequence:
Link to NCBI Protein BLAST