Transcript Information: S_Transcript_211085.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value1E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5944832837127
Replicate 24.0114162831845
Replicate 35.269353166743
Condition 2: 8 Hour
Replicate 12.3264062164145
Replicate 21.6270435374347
Replicate 31.8824384897906
Condition 3: 24 Hour
Replicate 11.7589386706712
Replicate 21.6482772055525
Replicate 30.98267705474478


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_211085.p1 GENE.S_Transcript_211085~~S_Transcript_211085.p1 ORF type:complete len:385 (+),score=21.71,LRR_8|PF13855.2|0.0062,LRR_8|PF13855.2|2.6e-06,LRR_8|PF13855.2|3.1e-11,LRR_8|PF13855.2|25,LRR_8|PF13855.2|4.5,LRR_8|PF13855.2|4.9,LRR_4|PF12799.3|47,LRR_4|PF12799.3|5.9,LRR_4|PF12799.3|0.00014,LRR_4|PF12799.3|1.4e-05,LRR_4|PF12799.3|4.1e-06,LRR_4|PF12799.3|8.7e-06,LRR_4|PF12799.3|13,LRR_4|PF12799.3|84,LRR_1|PF00560.29|2.6e+03,LRR_1|PF00560.29|4.7e+02,LRR_1|PF00560.29|0.023,LRR_1|PF00560.29|0.5,LRR_1|PF00560.29|0.039,LRR_1|PF00560.29|17,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|5e+03,LRR_1|PF00560.29|9.2e+02,LRR_1|PF00560.29|98,LRRNT_2|PF08263.8|5.9e-07 S_Transcript_211085:33-1187(+)
ATGAAAGAAATTTCGATACTCTCTTTCTTTTTCTTCCTCTTACTACTATGTCTCTTAGCTTCAGCCAATAATTGCAACTCAAATGATGAGAAAGTTCTCCTCCAAATCAAAGCTAAATATGACAACGATGGAAATAATGCATTCAATGTTGGTTGGGACAATAGCACTGAATGTTGTAGCTGGTTTGGCATCCAATGTAATAGTGATAACCGTATCACTTCACTTACCATTTACTTGTCACCCAATGGCTTATACCCTATTTTACCCGCCATCGGGTACCTCTCTTATCTTGAGTCTCTCAAGCTCACTTTCTTCTCCAATCTCACGGGCACTATCCCACGGTCATTTGCTAGGCTAACCCACCTCAAAACCCTCGATCTCGGTGGTATAGTCGATAGTCACAAACTAACTGGCCCAATCCCAGCCTTTTTGGGCCAACTCAAGAATCTCACTTATCTCGACCTATCCAACAATCAGTTCACTGGCCCAATCCCTTCTTCATTAGGCCAGATCATGGATCTCACTTATCTTGACCTTAGCAAGAACAAACTCACGGGTTCAATCCCAAGCACTCTCAGCCAGCTTACTAACCTACAAAAACTCTACCTCTCTTACAACAAACTTTCCGGTTCAATCCCGTCTTCTCTCTCTCATTTGACCAAATTGACCGGTCTTGTTCTCTCAGACAACCGGCTCATCAGTCCAATCCCGGCCAGCTTCGGCTCATTCAACAACCCTCAACTGGAGATCTCATTGGCACGAAACCGGTTGTCGGGTCCAATCCCGAGGTCCTTAGGCCATGCAAACGTATCATCTTTGGACTTCTATTCCAACAAGCTAACCGGAGATGCATCATTTTTGTTTGGGAGGAACAAAACCTCGTTACAATCAATCTATCTTGCCTTCAATAAATTCCACTTTGATTTCTCTAAGGTGGAATTTCCTATTGGGCTAAGAAATCTTGATATTAGATACAACCAAATATATGGATCACTTCCCAAACAGTTGGGGCAGCTGCCGTTAGAGGACTTTATGGTGGCCGGTAACCAGCTTTGTGGCCAGATTCCTACGGGCCGAAGGTTGAAGCGGTTCGGCCCTATTGCCTTTTCCCATAACAAGTGCCTTTGTGGTGTCCCTTTACCACCTTGCAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_211085.p1 GENE.S_Transcript_211085~~S_Transcript_211085.p1 ORF type:complete len:385 (+),score=21.71,LRR_8|PF13855.2|0.0062,LRR_8|PF13855.2|2.6e-06,LRR_8|PF13855.2|3.1e-11,LRR_8|PF13855.2|25,LRR_8|PF13855.2|4.5,LRR_8|PF13855.2|4.9,LRR_4|PF12799.3|47,LRR_4|PF12799.3|5.9,LRR_4|PF12799.3|0.00014,LRR_4|PF12799.3|1.4e-05,LRR_4|PF12799.3|4.1e-06,LRR_4|PF12799.3|8.7e-06,LRR_4|PF12799.3|13,LRR_4|PF12799.3|84,LRR_1|PF00560.29|2.6e+03,LRR_1|PF00560.29|4.7e+02,LRR_1|PF00560.29|0.023,LRR_1|PF00560.29|0.5,LRR_1|PF00560.29|0.039,LRR_1|PF00560.29|17,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|5e+03,LRR_1|PF00560.29|9.2e+02,LRR_1|PF00560.29|98,LRRNT_2|PF08263.8|5.9e-07 S_Transcript_211085:33-1187(+)
MKEISILSFFFFLLLLCLLASANNCNSNDEKVLLQIKAKYDNDGNNAFNVGWDNSTECCSWFGIQCNSDNRITSLTIYLSPNGLYPILPAIGYLSYLESLKLTFFSNLTGTIPRSFARLTHLKTLDLGGIVDSHKLTGPIPAFLGQLKNLTYLDLSNNQFTGPIPSSLGQIMDLTYLDLSKNKLTGSIPSTLSQLTNLQKLYLSYNKLSGSIPSSLSHLTKLTGLVLSDNRLISPIPASFGSFNNPQLEISLARNRLSGPIPRSLGHANVSSLDFYSNKLTGDASFLFGRNKTSLQSIYLAFNKFHFDFSKVEFPIGLRNLDIRYNQIYGSLPKQLGQLPLEDFMVAGNQLCGQIPTGRRLKRFGPIAFSHNKCLCGVPLPPCK*

Click here to download the sequence:
Link to NCBI Protein BLAST