Transcript Information: S_Transcript_212916.p1


Annotated TAIR IDAT5G19300.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6495593-6497987 | Forward length=398
E-Value1.3E-131
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.453805052471
Replicate 211.560576078107
Replicate 39.1873408534542
Condition 2: 8 Hour
Replicate 112.905402258339
Replicate 212.630600892539
Replicate 312.427689747554
Condition 3: 24 Hour
Replicate 19.8342279920756
Replicate 28.6975513060521
Replicate 37.6317625137252


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_212916.p1 GENE.S_Transcript_212916~~S_Transcript_212916.p1 ORF type:complete len:271 (-),score=49.01,Methyltrn_RNA_3|PF02598.13|1.6e-82 S_Transcript_212916:402-1172(-)
ATGGATGATCCAACTGTATCAAGTAAAGGGAGTAGTGATGAGGATGAAAGCAGTTCAGCGTTTTTTATAAGAATATTGCGGTACCTTGAGACACCTCAGTATCTAAGAAAGAGCCTATTTCCAAGGCATAGTAGCTTAAGATTTGTGGGCATGTTACCTCCCCTTGATGCGCCTCATCATCTTCGCAAGCATGAATGGGGATCTTATAGAGAAGGTGTAACTCTGAGAGAACGAACTGCAAACCCTCTTGGTACATTTGTAGACGTGGGCTTAAGCAAGAATGTTGTGGTTGATCAAGTGCTTGACCCAGGAATAAGGGTTACTGTAGCCATGGGAACTGACCGTAATCTGAATCCAGGGGTATTACGTCAGGTTGTTCCATCTACTACACCTAAGAAAGAAGAGGACACATACTGGGGTTATAAAGTAAGATATGCTCCAAACTTGAGCTCTGTGATTGAGGGATGCCCATATGAGGGTGGTTATGACTATGTGATTGGTACATCAGAGCACGGCCAGGTTGTCAAGTCGTCCAAGCTTTCTATACCAACTTTCAGGCATCTTCTGATAGCATTTGGCGGCCTGGCTGGTTTGGAAGAGAACATCGAGGAGGACAATAAGTTAAAGGGAAAGAATGCACGCGATGTGTTTAATTTGTATTTGAACCTGTGTCCTAATCAAGGTAGCCGGACAATTAGAACAGAGGAAGCAATCTTTATCTGTCTTCAGTATTTTCAAGAACCAATTTGCCAAGCATTGCTAAAAGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_212916.p1 GENE.S_Transcript_212916~~S_Transcript_212916.p1 ORF type:complete len:271 (-),score=49.01,Methyltrn_RNA_3|PF02598.13|1.6e-82 S_Transcript_212916:402-1172(-)
MDDPTVSSKGSSDEDESSSAFFIRILRYLETPQYLRKSLFPRHSSLRFVGMLPPLDAPHHLRKHEWGSYREGVTLRERTANPLGTFVDVGLSKNVVVDQVLDPGIRVTVAMGTDRNLNPGVLRQVVPSTTPKKEEDTYWGYKVRYAPNLSSVIEGCPYEGGYDYVIGTSEHGQVVKSSKLSIPTFRHLLIAFGGLAGLEENIEEDNKLKGKNARDVFNLYLNLCPNQGSRTIRTEEAIFICLQYFQEPICQALLKE*

Click here to download the sequence:
Link to NCBI Protein BLAST