Transcript Information: S_Transcript_216529.p1


Annotated TAIR IDAT5G37570.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:14924494-14926146 | Reverse length=550
E-Value8E-107
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.81517301080733
Replicate 20.23851664386502
Replicate 30.36553170616145
Condition 2: 8 Hour
Replicate 11.075875547531
Replicate 20.80619274377393
Replicate 31.0753941134045
Condition 3: 24 Hour
Replicate 10.43296165476853
Replicate 20.2041784826698
Replicate 30.31811587537984


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_216529.p1 GENE.S_Transcript_216529~~S_Transcript_216529.p1 ORF type:complete len:555 (+),score=94.40,PPR_2|PF13041.2|0.0029,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|4.4e-07,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.1e-10,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|1.9e-09,PPR_2|PF13041.2|3.6,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.0031,PPR|PF01535.16|2.2,PPR|PF01535.16|5.9e-07,PPR|PF01535.16|8e-06,PPR|PF01535.16|6.6e-09,PPR|PF01535.16|21,PPR|PF01535.16|0.047,PPR|PF01535.16|0.00047,PPR|PF01535.16|0.59,PPR|PF01535.16|1.5,PPR|PF01535.16|2.8e+02,PPR_1|PF12854.3|7.9e+02,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|5.2e-05,PPR_1|PF12854.3|4e-05,PPR_1|PF12854.3|6.8e-05,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|0.00038,PPR_1|PF12854.3|7.2e+02,PPR_1|PF12854.3|0.00016,PPR_3|PF13812.2|7.4e+03,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|5.2,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|7.1e-06,PPR_3|PF13812.2|7.7,PPR_3|PF13812.2|0.0049,PPR_3|PF13812.2|0.61,PPR_3|PF13812.2|4.7,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|9.8e+03,PPR_3|PF13812.2|6.1e+03,TPR_14|PF13428.2|11,TPR_14|PF13428.2|5.9,TPR_14|PF13428.2|2.1e+02,TPR_14|PF13428.2|1.9e+02,TPR_14|PF13428.2|2.1e+02,TPR_14|PF13428.2|5.6e+02 S_Transcript_216529:986-2650(+)
ATGAAACTAACAGAGCTATCAGCTAGCTCTCTCTTGAAAAATTGCAAATCCATCTCTCAACTCAAACAAATACATGCACAAATCTTACGTTTCAATCTCCTAAATTTCTCCTCTGTAATTTCATCTCTTATCCCACTCTACGTTTCTCTCTCTCCTTTCCAAATTCATCTCTTGTTATCCTCACTCTCTCATTATCCAACATTATCCCTCTGCAATTACTCAATCAGAGCCTTCTCTAAAACCCCATCTCTTTGCTTTGAATCATTGAATTTGTACCTTCAAATGGTCCGTACTAATATAAAACCTGATAATTACACTTACCCATTTCTTTTTAAATCTTGTGCTGCTCTTTGTGCACTTAATCAGGGTACTGAGGCTCATGGTCGAGCTTTCAAAACTGGGTTTTTTTCCTTTGTGGAGGTCTTCAATGCATTGGTTGACATGTATGGGAAATGTAGTGAACTGTGTTGTGCACGCCAATTGTTCGATGAAATGCCTCAAAGAGATGTGGTTTCTTATAATGCACTTCTGGGAGCACACGCGAGGTTAGGAGAGGATATGATGAGTGCCCAGATGGTTTTTGATCGAATGCCGGGGAGAAATGTGATTTCTTGGAATGCAATGATTGTGGGTTATGTGAATTCTGGTGATTTGGATTCAGCTCGGGCTGTCTTTGATAAGATGTCTGAGAGGAATGTTGTTACTTGGACGACGATGTTGGTGGGTTATACCAAAAGTGGGATGATGGATTTAGCTAGGGTCCTTTTCGACGTGATGCCTGAGAAGTCTTTAGTTTGTTGGACAGCTATGATTTCTGGGTATGCTCAAAATGGACGGCCAAATGAAGCTTTGGCCATTTTTCATAGAATGGAGAGAGCAAAAATGAGGCCTGATGCTTTTGTTATGACCTCTATCATCTCTGCATTGGCACAAATAGGGCGTCCTGATTTGGCCAATTGGATCACTACTGTAGCGGAACAGGAATGCATTGAGCGGAACGAGAGAGTTCTTACAGCCTTGCTTGACATGCATGCAAAATGTGGCAATATTGAACAAGCATGTCAACTGTTTGAGGAAATCCCTCAGCCTGATGTATTTCCTTATAGTGCATTGATAACAGGGCTTGCTTCACATGGACACAGCATGAGAGCGCTCGAAGTTTTTCACAAAATGCAAATGGCTAATGTAGAACCTGATTATATAACCTTTGTTGGTGTACTGAATGCATGTAGCCATACAGGACTTGTTGAAGATGGCTTGAACTATTGGGATAGTATGATTAATAATTACAGGATTGAACCAGATGCTGATCATTATGCTTGCATTGTTGATATGCTTGGGCGTGCTGGTAGACTTGATCAAGCATACAAAATGGTCCAGAGTATGCCAATGGGACCTCGTCCTGGAGCTTTAGGTGCTCTCCTTGCTGCCTGTCGAACGTATAACAATGTTGAAATTGCAGAAAATGTTGCTCAGGAACTCTTTCAATTAGAACCTCTAAATACAGGGAACTATGTGCTACTTTCTGGAATCTATGCTGCTAGAGAGCAATGGGATGAGGCTGCAAGAGTAAGGAAGGTTATGAAGGATAAGATCACAGCTAAGCTACCTGGTTATAGTTGGGCTGAACTCGATAGAAATGAAAGAGCTCCACATAAGAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_216529.p1 GENE.S_Transcript_216529~~S_Transcript_216529.p1 ORF type:complete len:555 (+),score=94.40,PPR_2|PF13041.2|0.0029,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|4.4e-07,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.1e-10,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|1.9e-09,PPR_2|PF13041.2|3.6,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.0031,PPR|PF01535.16|2.2,PPR|PF01535.16|5.9e-07,PPR|PF01535.16|8e-06,PPR|PF01535.16|6.6e-09,PPR|PF01535.16|21,PPR|PF01535.16|0.047,PPR|PF01535.16|0.00047,PPR|PF01535.16|0.59,PPR|PF01535.16|1.5,PPR|PF01535.16|2.8e+02,PPR_1|PF12854.3|7.9e+02,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|5.2e-05,PPR_1|PF12854.3|4e-05,PPR_1|PF12854.3|6.8e-05,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|0.00038,PPR_1|PF12854.3|7.2e+02,PPR_1|PF12854.3|0.00016,PPR_3|PF13812.2|7.4e+03,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|5.2,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|7.1e-06,PPR_3|PF13812.2|7.7,PPR_3|PF13812.2|0.0049,PPR_3|PF13812.2|0.61,PPR_3|PF13812.2|4.7,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|9.8e+03,PPR_3|PF13812.2|6.1e+03,TPR_14|PF13428.2|11,TPR_14|PF13428.2|5.9,TPR_14|PF13428.2|2.1e+02,TPR_14|PF13428.2|1.9e+02,TPR_14|PF13428.2|2.1e+02,TPR_14|PF13428.2|5.6e+02 S_Transcript_216529:986-2650(+)
MKLTELSASSLLKNCKSISQLKQIHAQILRFNLLNFSSVISSLIPLYVSLSPFQIHLLLSSLSHYPTLSLCNYSIRAFSKTPSLCFESLNLYLQMVRTNIKPDNYTYPFLFKSCAALCALNQGTEAHGRAFKTGFFSFVEVFNALVDMYGKCSELCCARQLFDEMPQRDVVSYNALLGAHARLGEDMMSAQMVFDRMPGRNVISWNAMIVGYVNSGDLDSARAVFDKMSERNVVTWTTMLVGYTKSGMMDLARVLFDVMPEKSLVCWTAMISGYAQNGRPNEALAIFHRMERAKMRPDAFVMTSIISALAQIGRPDLANWITTVAEQECIERNERVLTALLDMHAKCGNIEQACQLFEEIPQPDVFPYSALITGLASHGHSMRALEVFHKMQMANVEPDYITFVGVLNACSHTGLVEDGLNYWDSMINNYRIEPDADHYACIVDMLGRAGRLDQAYKMVQSMPMGPRPGALGALLAACRTYNNVEIAENVAQELFQLEPLNTGNYVLLSGIYAAREQWDEAARVRKVMKDKITAKLPGYSWAELDRNERAPHKR*

Click here to download the sequence:
Link to NCBI Protein BLAST