Transcript Information: S_Transcript_21807.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.38458464609
Replicate 27.1994365924522
Replicate 35.921088953156
Condition 2: 8 Hour
Replicate 13.2549279957729
Replicate 21.8839451486086
Replicate 30.89750937284132
Condition 3: 24 Hour
Replicate 11.7245960650469
Replicate 21.9085315011661
Replicate 30.92923321492533


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_21807.p1 GENE.S_Transcript_21807~~S_Transcript_21807.p1 ORF type:complete len:190 (-),score=31.04,UBN2_3|PF14244.2|5.3e-33,Retrotrans_gag|PF03732.13|2.4e+03,Retrotrans_gag|PF03732.13|7.4e-08,UBN2|PF14223.2|1.2e-07 S_Transcript_21807:227-796(-)
ATGAAGGAACTCATGTACCCATCAACATCATCCCCCTATTATCTTCATCCTTCAGACGGTAAAAACCTGTTTTTGACTGGCTTTGAAAATTACCACACTTGGGCATTGGTTATGAAAAACGCATTACTTGCCATGAACAAGTGGGGTTTTATTGATGGGAGTCTTTCTAAACCCAACCCCAACACTCCACAAGAAGATTCTTGGAAAAAATGCGATTCCATGGTCTATTCATGGCTTATGAATACCATCGATTATAATCTTGTACCCAGCTTATCAAACGCCATCTCAGTAAAAGCTCTATTTGAGGCAAAATCCTTGTGGGATGAACTTAAGGAAAGATTTTCAGTCAGTAAAGCTGCTAGAATTTATCACTTGAAATCCGAGTTGTCATCTTTGAAGCAAAGTGGTATGAGTGTTGAAACTTACCTTCAAAAGATGAAGGTCATATGGGATGAACTAGAACCTTACTACTATGATGGTTTTGTTTGCTCTTATTGTGGAGTGGTGCGTTTGACAAGATTGTCAAAGAAAGGGAAGTTGAGAAGATTTATCAGTTTTCTTGGGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_21807.p1 GENE.S_Transcript_21807~~S_Transcript_21807.p1 ORF type:complete len:190 (-),score=31.04,UBN2_3|PF14244.2|5.3e-33,Retrotrans_gag|PF03732.13|2.4e+03,Retrotrans_gag|PF03732.13|7.4e-08,UBN2|PF14223.2|1.2e-07 S_Transcript_21807:227-796(-)
MKELMYPSTSSPYYLHPSDGKNLFLTGFENYHTWALVMKNALLAMNKWGFIDGSLSKPNPNTPQEDSWKKCDSMVYSWLMNTIDYNLVPSLSNAISVKALFEAKSLWDELKERFSVSKAARIYHLKSELSSLKQSGMSVETYLQKMKVIWDELEPYYYDGFVCSYCGVVRLTRLSKKGKLRRFISFLGS*

Click here to download the sequence:
Link to NCBI Protein BLAST