Transcript Information: S_Transcript_21808.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12042082006869
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.20246016868531
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_21808.p1 GENE.S_Transcript_21808~~S_Transcript_21808.p1 ORF type:3prime_partial len:221 (-),score=39.59,UBN2_3|PF14244.2|3.3e-33,Retrotrans_gag|PF03732.13|2.9e+03,Retrotrans_gag|PF03732.13|2.4e-08,UBN2|PF14223.2|1.3e-07,UBN2|PF14223.2|8.5e+02 S_Transcript_21808:1-660(-)
ATGAAGGAACTCATGTACCCATCAACATCATCCCCCTATTATCTTCATCCTTCAGACGGTAAAAACCTGTTTTTGACTGGCTTTGAAAATTACCACACTTGGGCATTGGTTATGAAAAACGCATTACTTGCCATGAACAAGTGGGGTTTTATTGATGGGAGTCTTTCTAAACCCAACCCCAACACTCCACAAGAAGATTCTTGGAAAAAATGCGATTCCATGGTCTATTCATGGCTTATGAATACCATCGATTATAATCTTGTACCCAGCTTATCAAACGCCATCTCAGTAAAAGCTCTATTTGAGGCAAAATCCTTGTGGGATGAACTTAAGGAAAGATTTTCAGTCAGTAAAGCTGCTAGAATTTATCACTTGAAATCCGAGTTGTCATCTTTGAAGCAAAGTGGTATGAGTGTTGAAACTTACCTTCAAAAGATGAAGGTCATATGGGATGAACTTGAACTTTACTACTATGATGGTTCTATTTGCTATTATTGTGGTGCGTTTGACAAGATTGTCAAAGAAAGGGAAGATGAGAAGATTTATCAGTTTCTTTTGGGTCTTGATGGTTCGGTTTTTGGTATAATTCGGGCTCGGATATTGGATATGGATCCTTTACCTTCCCTTGATCAAGTATACTCTATGGTGATTGGGATTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_21808.p1 GENE.S_Transcript_21808~~S_Transcript_21808.p1 ORF type:3prime_partial len:221 (-),score=39.59,UBN2_3|PF14244.2|3.3e-33,Retrotrans_gag|PF03732.13|2.9e+03,Retrotrans_gag|PF03732.13|2.4e-08,UBN2|PF14223.2|1.3e-07,UBN2|PF14223.2|8.5e+02 S_Transcript_21808:1-660(-)
MKELMYPSTSSPYYLHPSDGKNLFLTGFENYHTWALVMKNALLAMNKWGFIDGSLSKPNPNTPQEDSWKKCDSMVYSWLMNTIDYNLVPSLSNAISVKALFEAKSLWDELKERFSVSKAARIYHLKSELSSLKQSGMSVETYLQKMKVIWDELELYYYDGSICYYCGAFDKIVKEREDEKIYQFLLGLDGSVFGIIRARILDMDPLPSLDQVYSMVIGIE

Click here to download the sequence:
Link to NCBI Protein BLAST