Transcript Information: S_Transcript_219030.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.1173552636038
Replicate 30.29429898005746
Condition 2: 8 Hour
Replicate 14.9910487976269
Replicate 211.661921099432
Replicate 36.8029300866962
Condition 3: 24 Hour
Replicate 10.46478475511903
Replicate 20.24110437847178
Replicate 30.26831962133102


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_219030.p2 GENE.S_Transcript_219030~~S_Transcript_219030.p2 ORF type:complete len:188 (+),score=25.03,UBN2_3|PF14244.2|4.1e-11,Retrotrans_gag|PF03732.13|1.7e-06 S_Transcript_219030:976-1539(+)
ATGTCTGACTCTATTAGACATTCTGTGCTTTATATTGATTCTGCATTTGGTATGTGGTTACATTTAGAGAATAGATTTTCTGTTAGTAATGGTTCCAAGTATTATCAAATAAACAAGGAAATCTATGATTTGAGACAAAAAGTATCTAATACCAATGAATTTTATACTAAGATGAGATGTTTGTGGGAGGAGTTAGATTCTATGAGCAATCTGTCTAAGATAACTCAGTTCACTGATGAAATGAAAGTTTTCTTGAAATCATTGGACAGACAACAAGAAGAACATATGTTATTTCAGTTTTTGAATGGCCTAAACATCATATATAATACTCAAAGGAGTAATTTGTTGTTCATGAATCCTTTACCTACTGTGGAGATGGCTTGTTCTAATTTGCAACAAGAGGAGACACAAAGAGATGTTCTGAGTAATGTTACGGTAAAAGTTGAACCTTTTGGTCTTTATAGTAAGGGGAGAACAATTTTAAGTGCACTGGTTGTGAAAGGTCAGGGCATACAAGAGATAGATGTTGGGCTGAAAATGCCTATCCATCTTGGCATGCTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_219030.p2 GENE.S_Transcript_219030~~S_Transcript_219030.p2 ORF type:complete len:188 (+),score=25.03,UBN2_3|PF14244.2|4.1e-11,Retrotrans_gag|PF03732.13|1.7e-06 S_Transcript_219030:976-1539(+)
MSDSIRHSVLYIDSAFGMWLHLENRFSVSNGSKYYQINKEIYDLRQKVSNTNEFYTKMRCLWEELDSMSNLSKITQFTDEMKVFLKSLDRQQEEHMLFQFLNGLNIIYNTQRSNLLFMNPLPTVEMACSNLQQEETQRDVLSNVTVKVEPFGLYSKGRTILSALVVKGQGIQEIDVGLKMPIHLGML*

Click here to download the sequence:
Link to NCBI Protein BLAST