Transcript Information: S_Transcript_219031.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value0.0007
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.71927030365353
Replicate 20.29814580483128
Replicate 30
Condition 2: 8 Hour
Replicate 18.6454285069458
Replicate 210.278957483118
Replicate 311.954157778469
Condition 3: 24 Hour
Replicate 10
Replicate 20.15313386200235
Replicate 30.51125765686046


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_219031.p2 GENE.S_Transcript_219031~~S_Transcript_219031.p2 ORF type:complete len:148 (+),score=34.42,UBN2_3|PF14244.2|2.8e-13 S_Transcript_219031:697-1140(+)
ATGTCTAGTGAGAAAAGAAACAACAATATTCTTTACCGTGACTTGCAAAACCCTCTCTTCTTACATCCTTCAGATGATCCATCATCCATCACAATTGAAGAGAAATTACTTGGAGCTGTGGACTATCGATCCTGGAAACAAAACATGGAAATTGCACTTGCTACAAAGCGAAAGTTAGGGTTCATCAAAGGAACTGTCATAAGATGTGATGATGATCCTGTCAAAGCTGAACAGTGGAATACATGCAATAGTATGATGGCTTGTTCTAATTTGCAACAAGAGGAGACACAAAGAGATGTTCTGAGTAATGTTACGGTAAAAGTTGAACCTTTTGGTCTTTATAGTAAGGGGAGAACAATTTTAAGTGCACTGGTTGTGAAAGGTCAGGGCATACAAGAGATAGATGTTGGGCTGAAAATGCCTATCCATCTTGGCATGCTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_219031.p2 GENE.S_Transcript_219031~~S_Transcript_219031.p2 ORF type:complete len:148 (+),score=34.42,UBN2_3|PF14244.2|2.8e-13 S_Transcript_219031:697-1140(+)
MSSEKRNNNILYRDLQNPLFLHPSDDPSSITIEEKLLGAVDYRSWKQNMEIALATKRKLGFIKGTVIRCDDDPVKAEQWNTCNSMMACSNLQQEETQRDVLSNVTVKVEPFGLYSKGRTILSALVVKGQGIQEIDVGLKMPIHLGML*

Click here to download the sequence:
Link to NCBI Protein BLAST