Transcript Information: S_Transcript_219033.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.77702193387388
Replicate 21.1272958168073
Replicate 31.2115666040321
Condition 2: 8 Hour
Replicate 10.77829891668369
Replicate 22.2861743135487
Replicate 31.8670815420422
Condition 3: 24 Hour
Replicate 12.3917755646636
Replicate 20.16542928157918
Replicate 31.6569226251536


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_219033.p1 GENE.S_Transcript_219033~~S_Transcript_219033.p1 ORF type:complete len:137 (+),score=17.26,UBN2_3|PF14244.2|3.9e-24,Retrotrans_gag|PF03732.13|1.1e-06 S_Transcript_219033:565-975(+)
ATGGAGATTGCACTTGCTACGAAGAGAAAGCCGAGATTCATAAAAGGAACCGTTACAAGGAATGATGGTGATCCAGTCAAAGCAGAACGGTGGGATACTTGCAAGAATATGGTAATAGTTTGTTTGCTAAACTCTATGAATGACTCTATTAGACGCCTTGTGCTCTATATTGACTCTGCCTTTGCTATGTGGTTACATCTAGAAAATAGATTTTCTGTTAGTAATGGTTCAAGAAAATATCATATTAACAAGGAAATATATGATCTGAGACATAATGGATCAAGTGTGAATGAATTTCACACTAAGGTGAGATGCTTGTGGGAAGAATTGGACTCTATGAGTAATTTACTTAAGATAACACAGTTTACTGATGAGATTAAGGCTTTCTTGAAAGCTTTGGACAAACAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_219033.p1 GENE.S_Transcript_219033~~S_Transcript_219033.p1 ORF type:complete len:137 (+),score=17.26,UBN2_3|PF14244.2|3.9e-24,Retrotrans_gag|PF03732.13|1.1e-06 S_Transcript_219033:565-975(+)
MEIALATKRKPRFIKGTVTRNDGDPVKAERWDTCKNMVIVCLLNSMNDSIRRLVLYIDSAFAMWLHLENRFSVSNGSRKYHINKEIYDLRHNGSSVNEFHTKVRCLWEELDSMSNLLKITQFTDEIKAFLKALDKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST