Transcript Information: S_Transcript_220098.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0005
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.96385944936194
Replicate 20.1263946250832
Replicate 30.60214258771134
Condition 3: 24 Hour
Replicate 10.24683484170163
Replicate 20.1280441331997
Replicate 30.14249742601761


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_220098.p1 GENE.S_Transcript_220098~~S_Transcript_220098.p1 ORF type:3prime_partial len:177 (+),score=23.74,gag_pre-integrs|PF13976.2|7.3e-09 S_Transcript_220098:176-703(+)
ATGAGGAACATACCTCAAGCTTCTTCTTCTTTTAGACTTGCATCTAAAACTGATGATGAACTGGGAAGTACATTTGCAGGACTCACATTCTCACAAACTTGGAGGCATTGTAAACTGCATGAAGGACTTTATTATCTGCCGAATGTTCCTCTTGATCAGATTGATAAAGAACTTTTGGACAATCCTCTCAATACTTCTGAAGTGGAGTTTTGTAGCCAAAATCAATCTTTCAATATTAGTTTGTCTAATCATGTAAACACTGATTCCTCTTGTAATAAGAGCTCTGTGTATAGCTTATGGCATCATAGATTGGGCCATACTCCCTTTAATAAAATGAGATCTATTCCTTCAATTTCTGATATATTCAAGTCTTGCGATTCCAGTTCTTTGCCTGTGTGTATATCATGTCCTATGGCCAAGATGTCCAAATTACCTTTTCATTTAAGTCAGTCAGAAGCACATTATGCTTTTGAGTTTCTTCATATGGATATTTGGGGTCCTTATAGAGTTCCAACACAACAATTTCAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_220098.p1 GENE.S_Transcript_220098~~S_Transcript_220098.p1 ORF type:3prime_partial len:177 (+),score=23.74,gag_pre-integrs|PF13976.2|7.3e-09 S_Transcript_220098:176-703(+)
MRNIPQASSSFRLASKTDDELGSTFAGLTFSQTWRHCKLHEGLYYLPNVPLDQIDKELLDNPLNTSEVEFCSQNQSFNISLSNHVNTDSSCNKSSVYSLWHHRLGHTPFNKMRSIPSISDIFKSCDSSSLPVCISCPMAKMSKLPFHLSQSEAHYAFEFLHMDIWGPYRVPTQQFQ

Click here to download the sequence:
Link to NCBI Protein BLAST