Transcript Information: S_Transcript_220572.p1


Annotated TAIR IDAT1G76160.1
Annotated Gene NameSKU5 similar 5
Annotated Gene Symbol(s)sks5
Annotation TypeOrtholog
Chromosome Positionchr1:28578211-28581020 | Reverse length=541
E-Value4.3E-288
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2545083919306
Replicate 21.1376760729474
Replicate 30.9170421257039
Condition 2: 8 Hour
Replicate 10.98183196671883
Replicate 20.41200457900049
Replicate 31.1384154337835
Condition 3: 24 Hour
Replicate 10.40229988012144
Replicate 20.66781028585922
Replicate 30.60384268373206


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_220572.p1 GENE.S_Transcript_220572~~S_Transcript_220572.p1 ORF type:complete len:543 (+),score=49.73,Cu-oxidase|PF00394.18|3.4e-37,Cu-oxidase|PF00394.18|5.7e+02,Cu-oxidase_3|PF07732.11|7e-36,Cu-oxidase_3|PF07732.11|3.8e+03,Cu-oxidase_3|PF07732.11|1.6e+03,Cu-oxidase_3|PF07732.11|3.2e+03,Cu-oxidase_2|PF07731.10|24,Cu-oxidase_2|PF07731.10|51,Cu-oxidase_2|PF07731.10|8.4e-27 S_Transcript_220572:120-1748(+)
ATGGCCCTTCATAAAAACTTGTTGGATTATCATCAATGGAGTATAGCTCTAATGATTTCATTCTTCTATATTGCTTCTGCTGATAGTCCTTACAGGTACTTCACCTGGAAGGTCACCTATGGCCACATCTATCCCCTTGGCATTCAACAACGGGGAATACTTATCAATGATCAATTTCCAGGTCCTGATATATATGCTGTCACCAATGATAACCTCATAATCAACGTTTTCAATTATTTGGATGAACCCTTCCTGATTACCTGGGATGGGATTCAGCAAAGGAAAAACTCATACGAAGATGGAGTATATGGAACGACATGCCCGATTCCAGCGGGCAGCAACTTCACATACAAAATGCAAGTGAAAGATCAAATTGGGAGCTTCTTCTATTTCCCCTCAACAGCTTTCCACAAGGCAGCTGGTGCCTTTGGTGGGATTCGGATTTCCAGCAGACCACTCATTCCTGTTCCCTTTCCCCAGCCAGCAAATGACTTTACCCTTCTCACTGGGGATTGGTACCTTAAAGATCATGCGGACTTGAGGGCCATTTTGGAACGTGGAAAGAAGCTACCGTTTCCTGATGGGAATCATATCAATGGGAGACGACCAAATGATGTAGCTTTTACTGTTGAAATGGGGAAGACATACAGATTCAGAATATCAAACGTGGGGCTTCAGAATTCACTTAACATAAGATTTGAAGGTCATAAAATGAAATTAGTGGAAGTAGAAGGGACCCACACAATGCAAGACTCTTATTCATCATTGGATGTCCACGTGGGCCAGTCATATTCTGTTTTAGTCACGGCTGATCAAGAGGTAAGAGACTACTACATTGCGGTTTCGACCCGATTCACTAATCGGATCCTTACTACCACCGCTATCCTACATTATGAGGGCTCCACAAGCCCAGTATCCGGCCCTCCCCCTGGTGGGCCCACCATAGAGGTTGGTTGGTCTCTTGAGCAAGCACGAAGCATAAGGACCAATTTAACGGCAAGTGGGCCAAGACCAAATCCACAAGGGTCATACCATTATGGAGAAATTCCAGTGAAGAGGACAATAAGGCTAAGGAGTTCTGCAGGTCGAGTGGATCAAAAGCAAAGATATGCTGTCAATAGTGTTTCTTTCATTCCAGCAGATACACCACTAAAGCTAGCCGATAACTTCAACATTCCCGGTGTATTCCGCGTTGGAAGCATGCCTGATCACCCAATTGGCAAGCGCATGTACCTTGACACGGGGGTTCTTGGGGCGGATTACCGCGACTTTGTGGAGATTGTCTTTGAGAACAAGAAGAACATCGTCCAATCTTGGCACCTTGACGGCTACAACTTCTTCGTCGTAGGAATGGATGGCGGAAAATGGACACCTAAGAGCAGGTCACAGTACAATCTTCATGATGCAGTTTCACGTTGCACCACGCAAGTGTACCCAAGATCCTGGACCGCGGTGTATGTAGCATTAGATAACGTTGGTATGTGGAATATGAGGACTCAATTCTGGGCAAGGCAGTATCTTGGAGAACAATTTTACTTGAGAGTTTATACACCATCACATTCTGTCAGAGATGAATACCCCATACCTGATAACGTCATTCTATGCGGCAGGGCTCTCCGCCATGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_220572.p1 GENE.S_Transcript_220572~~S_Transcript_220572.p1 ORF type:complete len:543 (+),score=49.73,Cu-oxidase|PF00394.18|3.4e-37,Cu-oxidase|PF00394.18|5.7e+02,Cu-oxidase_3|PF07732.11|7e-36,Cu-oxidase_3|PF07732.11|3.8e+03,Cu-oxidase_3|PF07732.11|1.6e+03,Cu-oxidase_3|PF07732.11|3.2e+03,Cu-oxidase_2|PF07731.10|24,Cu-oxidase_2|PF07731.10|51,Cu-oxidase_2|PF07731.10|8.4e-27 S_Transcript_220572:120-1748(+)
MALHKNLLDYHQWSIALMISFFYIASADSPYRYFTWKVTYGHIYPLGIQQRGILINDQFPGPDIYAVTNDNLIINVFNYLDEPFLITWDGIQQRKNSYEDGVYGTTCPIPAGSNFTYKMQVKDQIGSFFYFPSTAFHKAAGAFGGIRISSRPLIPVPFPQPANDFTLLTGDWYLKDHADLRAILERGKKLPFPDGNHINGRRPNDVAFTVEMGKTYRFRISNVGLQNSLNIRFEGHKMKLVEVEGTHTMQDSYSSLDVHVGQSYSVLVTADQEVRDYYIAVSTRFTNRILTTTAILHYEGSTSPVSGPPPGGPTIEVGWSLEQARSIRTNLTASGPRPNPQGSYHYGEIPVKRTIRLRSSAGRVDQKQRYAVNSVSFIPADTPLKLADNFNIPGVFRVGSMPDHPIGKRMYLDTGVLGADYRDFVEIVFENKKNIVQSWHLDGYNFFVVGMDGGKWTPKSRSQYNLHDAVSRCTTQVYPRSWTAVYVALDNVGMWNMRTQFWARQYLGEQFYLRVYTPSHSVRDEYPIPDNVILCGRALRHD*

Click here to download the sequence:
Link to NCBI Protein BLAST