Transcript Information: S_Transcript_221817.p1


Annotated TAIR IDAT5G48240.3
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19559301-19561153 | Forward length=356
E-Value2.2E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.861672538321
Replicate 214.31555047625
Replicate 312.389013552342
Condition 2: 8 Hour
Replicate 110.255722060911
Replicate 210.758980643533
Replicate 36.9968049390397
Condition 3: 24 Hour
Replicate 116.175219073188
Replicate 216.262582352493
Replicate 313.477428308077


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_221817.p1 GENE.S_Transcript_221817~~S_Transcript_221817.p1 ORF type:5prime_partial len:131 (+),score=25.47,Rrp15p|PF07890.8|1.5e-13 S_Transcript_221817:3-395(+)
GAAGCAAAGAAGGAAAAGCACTTGATTGAGGAGAAGGGGCATGTAAAGCCTGAGAATTTCTTAAATGCACATGAGAAGTTTCTGGTAGGCATCGCTACAAAAGGAGTGGTCAAGCTGTTTAATGCTGTCAATAAGGCTCAAAATGCGCAGAAAGGGTTGAATCCTTCAAGATTTAAAGACGCAAAAGCTTTGACAAAGCGGAGAAAAGAAGCCTCCCATTCAGAAGTGAGTCGGACTTCAGCACCATCAGCTGATACTACAACAAAGACATCCACACGCACAGGCGGGGAAGACAGTAACCAACCTGCATGGGCTCCCTTACGCGACACTTTCATGTTAACGAACTCCAAAATGAAGGACTGGGATAAAATGGTGGAGCAAACGGAAATCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_221817.p1 GENE.S_Transcript_221817~~S_Transcript_221817.p1 ORF type:5prime_partial len:131 (+),score=25.47,Rrp15p|PF07890.8|1.5e-13 S_Transcript_221817:3-395(+)
EAKKEKHLIEEKGHVKPENFLNAHEKFLVGIATKGVVKLFNAVNKAQNAQKGLNPSRFKDAKALTKRRKEASHSEVSRTSAPSADTTTKTSTRTGGEDSNQPAWAPLRDTFMLTNSKMKDWDKMVEQTEI*

Click here to download the sequence:
Link to NCBI Protein BLAST