Transcript Information: S_Transcript_221819.p1


Annotated TAIR IDAT5G48240.3
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19559301-19561153 | Forward length=356
E-Value1.3E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21462097770307
Replicate 20
Replicate 30.59492697043873
Condition 2: 8 Hour
Replicate 10.17197895417043
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.1827726740028
Replicate 30.40680716782445


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_221819.p1 GENE.S_Transcript_221819~~S_Transcript_221819.p1 ORF type:5prime_partial len:124 (+),score=23.36,Rrp15p|PF07890.8|2.8e-13 S_Transcript_221819:3-374(+)
GAAGCAAAGAAGGAAAAGCACTTGATTGAGGAGAAGGGGCATGTAAAGCCTGAGAATTTCTTAAATGCACATGAGAAGTTTCTGGTAGGCATCGCTACAAAAGGAGTGGTCAAGCTGTTTAATGCTGTCAATAAGGCTCAAAATGCGCAGAAAGGGTTGAATCCTTCAAGATTTAAAGACGCAAAAGCTTTGACAAAGCGGAGAAAAGAAGCCTCCCATTCAGAAGTGAGTCGGACTTCAGCACCATCAGCTGATACTACAACAAAGGTTGGCTGTCCTGACTCCCAACTAATCCTACTTTATATCAATACTATGAAGCCAACTTGCAATTTTCCTGGATATATGTCCTCTGAGCATTGTTTTTTTTTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_221819.p1 GENE.S_Transcript_221819~~S_Transcript_221819.p1 ORF type:5prime_partial len:124 (+),score=23.36,Rrp15p|PF07890.8|2.8e-13 S_Transcript_221819:3-374(+)
EAKKEKHLIEEKGHVKPENFLNAHEKFLVGIATKGVVKLFNAVNKAQNAQKGLNPSRFKDAKALTKRRKEASHSEVSRTSAPSADTTTKVGCPDSQLILLYINTMKPTCNFPGYMSSEHCFFF*

Click here to download the sequence:
Link to NCBI Protein BLAST