Transcript Information: S_Transcript_222214.p1


Annotated TAIR IDAT5G50280.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)EMB1006
Annotation TypeOrtholog
Chromosome Positionchr5:20459238-20461504 | Forward length=723
E-Value2.8E-136
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2005865218878
Replicate 22.322398900791
Replicate 32.3573422061745
Condition 2: 8 Hour
Replicate 14.8102384173984
Replicate 23.3641877653724
Replicate 33.365660148155
Condition 3: 24 Hour
Replicate 11.8888433093371
Replicate 21.3632367865472
Replicate 32.8445914742612


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_222214.p1 GENE.S_Transcript_222214~~S_Transcript_222214.p1 ORF type:3prime_partial len:266 (-),score=62.15,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|0.026,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|7.4e-16,PPR_2|PF13041.2|1.2e-11,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|3.7e-11,PPR|PF01535.16|5.5,PPR|PF01535.16|5.3,PPR|PF01535.16|19,PPR|PF01535.16|3.1e-09,PPR|PF01535.16|0.00013,PPR|PF01535.16|0.025,PPR|PF01535.16|6.3e-07,PPR|PF01535.16|30,PPR_3|PF13812.2|36,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|68,PPR_3|PF13812.2|4.3e-07,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.00099,PPR_3|PF13812.2|4.6,PPR_1|PF12854.3|3.2e+02,PPR_1|PF12854.3|77,PPR_1|PF12854.3|4.7,PPR_1|PF12854.3|9.1e-11,PPR_1|PF12854.3|0.44,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|0.8,ECSIT|PF06239.7|2.7,ECSIT|PF06239.7|0.065,ECSIT|PF06239.7|8.2 S_Transcript_222214:2-796(-)
ATGTGCATGTTTATAATGCTGCTTTGTCTGGTTTGCTTTCCAGTGAGAACTGAGAGATATGAGGATGCTTGGAAGGTGTATGAGATGATGGAGATGAATAATATCTTGCCAGATCGTGTGACAGGTTCTGTTATGATTACTATCATGCGGAAGGAAGGGAGGAGTGCCAAAGATGCGTGGGAGTTTTTTGAGCGAATGAATAGAAAAGGAGTCAAATGGAGTTTGGAGATAATAGGAGCTCTGATCAAATCTTTTTGTGACGAGGGACTCCAGAAGCAAGCCCTTATTATTCAAGCAGAGATGGAGAAGAGAGGGATATCCTCAAATGCTATAATATATAACACTCTTATGGATGCCTATTGTAAGTCCAACCATCTTGAAGAAGCTGAAGCTCTCTTTACAGAGATGAAAGACAAAAAGCTTTTGCCTACTTGTGCCACCTACAACATTTTTCTTGATGCATACAGCAAAAGGATGCAGCCAGAGATTGTTGAAAAACTTCTCCAAGAAATGCAAAATGCTGGCCTGGAACCAAATGTCAAATCATACACAAGCTTGATAAGTGCATATGGGAGGCAGAAGAACATGAGTGATATGGCTGCTGATGCATTTTTGAGGATGAAGAAGGCTGGTATAAAACCAACTTCGCATTCTTATACTGCTCTAATCCATGCGTACTCAGTAAGTGGATGGCATGAGAAAGCCTACAAAGCATTTGAGAACATGCAGAGGGAAGGAATCAAACCATCTATAGAAACATATACTGCTTTGCTTGATGCATTTAGGCGGGCTGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_222214.p1 GENE.S_Transcript_222214~~S_Transcript_222214.p1 ORF type:3prime_partial len:266 (-),score=62.15,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|0.026,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|7.4e-16,PPR_2|PF13041.2|1.2e-11,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|3.7e-11,PPR|PF01535.16|5.5,PPR|PF01535.16|5.3,PPR|PF01535.16|19,PPR|PF01535.16|3.1e-09,PPR|PF01535.16|0.00013,PPR|PF01535.16|0.025,PPR|PF01535.16|6.3e-07,PPR|PF01535.16|30,PPR_3|PF13812.2|36,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|68,PPR_3|PF13812.2|4.3e-07,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.00099,PPR_3|PF13812.2|4.6,PPR_1|PF12854.3|3.2e+02,PPR_1|PF12854.3|77,PPR_1|PF12854.3|4.7,PPR_1|PF12854.3|9.1e-11,PPR_1|PF12854.3|0.44,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|0.8,ECSIT|PF06239.7|2.7,ECSIT|PF06239.7|0.065,ECSIT|PF06239.7|8.2 S_Transcript_222214:2-796(-)
MCMFIMLLCLVCFPVRTERYEDAWKVYEMMEMNNILPDRVTGSVMITIMRKEGRSAKDAWEFFERMNRKGVKWSLEIIGALIKSFCDEGLQKQALIIQAEMEKRGISSNAIIYNTLMDAYCKSNHLEEAEALFTEMKDKKLLPTCATYNIFLDAYSKRMQPEIVEKLLQEMQNAGLEPNVKSYTSLISAYGRQKNMSDMAADAFLRMKKAGIKPTSHSYTALIHAYSVSGWHEKAYKAFENMQREGIKPSIETYTALLDAFRRAG

Click here to download the sequence:
Link to NCBI Protein BLAST