Transcript Information: S_Transcript_222639.p1


Annotated TAIR IDAT5G60250.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24252226-24254710 | Forward length=655
E-Value8E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.98749540761338
Replicate 20.69585792667486
Replicate 30.37638236905307
Condition 2: 8 Hour
Replicate 10.67260043671848
Replicate 20.91313667917251
Replicate 30.87003459612169
Condition 3: 24 Hour
Replicate 11.2563847647652
Replicate 20.58867043055448
Replicate 31.1698536366009


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_222639.p1 GENE.S_Transcript_222639~~S_Transcript_222639.p1 ORF type:complete len:539 (+),score=85.12,IBR|PF01485.17|17,IBR|PF01485.17|46,IBR|PF01485.17|1.6e-09,IBR|PF01485.17|4.1e-09,RVT_3|PF13456.2|9.9e-12 S_Transcript_222639:211-1827(+)
ATGGCAACTAAAATGGAGTACGAAGATTACGACGACAAGAAAACCCTAATTTCAGAGCAGCAAAGAGGGTTAATGGCAGACAAAGCTACTGAATCAGACTTGAACTTAGCCTTTGATCTCCAAATGCAAGAAGCCCTAACTGCTTCTCTCTTTGTCTCTCCATCTTCACATCCTCCATCTCCATTTCCTTCATCACTATCATCAGAACAACGAGAATTATCAATCTCTGATATTCTGTTAAGCGAAATCGAGAGGTACGAGCAAGAAAGGAAGGATTTTGAACTTTGCAAGCTCGAAACGAAGAGATTGAAGCAAGACCTAAGTGTTCGATTACACGATCGAAATTTCGCTTCAGAGATTAATCGAATTTCTGATCGTGAATGGCGAGTTAATGGCGATAACATTCACAAACCCTTAGGTTTAGGGTTTGGTGATGAAAAAGAGTGTTTTAGGTTGTATTTCAAGGGGATTGTGGTTGTTGATCAGAGTGATAAGAAGATGAAGAAGGATACTTCGTTGAAGGCGATAGGAGTCGCGATTTGTGACTCGAGAGATAACGTGATATTCGAGTTGTCGAAGCCAATGGTGTTGGAGGAAGGAAGTAGTGAGAGAGAAATGAGACTTGAGATTGAAGCTTTGATTCAAGGACTTAATGCTGCTTTGAGTTTGGATTTGAAGAGAATTCAATATTACTGTGATGATTTCATGCTATACCTATATGTTAGTGGCAGACATCAACCTACTGAACGCACTATGATAAATCTGATAAAGAGTGTGAATCTTCTTCATGAAAAGTTTGTTTACTGCAATCCATTGCTTGTTGCTCGAACCGAAATCAAGTTTGCTTTCAAGCTTGCTAGATCTAGCTTATCTCAGGCTATTAGATCAGCAGGTACCTCTAGGAAGGATGTAACAGTGGCTTGCTCAATATGCTTTGAAGATACAAATGCTCAGCTCATGTTTACAGTTGATAGTTGTCGGCACCAATACTGCTCATTTTGCATAGAGCAACATGTGGAGGTGAAGCTACTTCATGGGGACTTACCCAAATGCCCTCATGAAGGTTGTAAATCTGCGATAACTATTGATAGCTGCCGAAACGTCTTGGAACCCAAGTTTCTGGAGATTATGAATCAACGTGTGAGGGAAGCCACTATTCCTGCTTCTCAAAAAATTTATTGCCCCAACTCGACCTGCTCTGCATTGATGTCTAGGGATGAGGTGAAGGATTTTAGCAAGTCAACAACAGTGAGAGGGAAAGAGCTGGGAGCATGCTGTTGCATAAAATGCTTCCGGCGTTTCTGTATTGATTGCAAAGCCCCTTGGCACTCCTCCATGACATGCTATGAGTACCAAAAGAGTCGGTCCAGTTCAAACAATACAGACATGAAGTTGAAGTCTCTTGCAACAAGCAAAAAGTGGCGTCAGTGCCCTCAGTGCAGCAACATGATTGAACTTGCTGAAGGTTGTTACCATATAACCTGCAGATGTGGCCATGATTTTTGCTATACTTGTGGAGCGAAGTGGAAAAACAAGAAGCCGACTTGTTTATGCAAACTTTGGGATGAACGGAATATAATCCATGATCCAAACCGTCAGCAGCGGAGGAGAGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_222639.p1 GENE.S_Transcript_222639~~S_Transcript_222639.p1 ORF type:complete len:539 (+),score=85.12,IBR|PF01485.17|17,IBR|PF01485.17|46,IBR|PF01485.17|1.6e-09,IBR|PF01485.17|4.1e-09,RVT_3|PF13456.2|9.9e-12 S_Transcript_222639:211-1827(+)
MATKMEYEDYDDKKTLISEQQRGLMADKATESDLNLAFDLQMQEALTASLFVSPSSHPPSPFPSSLSSEQRELSISDILLSEIERYEQERKDFELCKLETKRLKQDLSVRLHDRNFASEINRISDREWRVNGDNIHKPLGLGFGDEKECFRLYFKGIVVVDQSDKKMKKDTSLKAIGVAICDSRDNVIFELSKPMVLEEGSSEREMRLEIEALIQGLNAALSLDLKRIQYYCDDFMLYLYVSGRHQPTERTMINLIKSVNLLHEKFVYCNPLLVARTEIKFAFKLARSSLSQAIRSAGTSRKDVTVACSICFEDTNAQLMFTVDSCRHQYCSFCIEQHVEVKLLHGDLPKCPHEGCKSAITIDSCRNVLEPKFLEIMNQRVREATIPASQKIYCPNSTCSALMSRDEVKDFSKSTTVRGKELGACCCIKCFRRFCIDCKAPWHSSMTCYEYQKSRSSSNNTDMKLKSLATSKKWRQCPQCSNMIELAEGCYHITCRCGHDFCYTCGAKWKNKKPTCLCKLWDERNIIHDPNRQQRRRA*

Click here to download the sequence:
Link to NCBI Protein BLAST