Transcript Information: S_Transcript_2230.p1


Annotated TAIR IDAT5G04310.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1203356-1207352 | Reverse length=518
E-Value1E-206
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.637634637458
Replicate 222.93068397075
Replicate 323.062966034151
Condition 2: 8 Hour
Replicate 120.530655274258
Replicate 221.769707786069
Replicate 320.742129139423
Condition 3: 24 Hour
Replicate 116.779403260891
Replicate 221.06842939499
Replicate 318.537941539992


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_2230.p1 GENE.S_Transcript_2230~~S_Transcript_2230.p1 ORF type:complete len:483 (+),score=50.77,Pec_lyase_C|PF00544.15|1.7e-21 S_Transcript_2230:153-1601(+)
ATGCTTCTCCGAATCCATGTCTTGTTCTCTTTCTTCTTTGTCTCTTTGTTCAGCCCTCTCTCGCCACCTTTTGTCAGAGCCTCCTCCAACCTCATACTCCCCCATCAGCACCCTGATCCTGACGCTGTTGTTGAAGACTTTCACAGGATGGTCAATGTGTCACTCACTAGAAGGCAAATGCTGGAAATGTCTAAATCATCTTGCCTGACAGGCAATCCGATTGATGACTGCTGGCGGTGCGACCCCCATTGGGCATCCAACCGCCAAAGGCTGGCGGACTGCGGAATCGGGTTCGGGGCTGCGGCGAAGGGCGGGAAGGGAGGCCAAATCTATGTGGTCACAGACTCTTCAGATTCGGACCCTGTGAACCCGAAGCCGGGTACGCTCCGGTACGGTGTGGTCCAGGAGGAGCCACTGTGGATCATCTTCTCAAAGGATATGACCATCAAGCTCAGGTATGAACTTATTGTCAACAATTTCAAGACAATTGATGGCCGGGGGGCCAACGTACACATTACTGGCGGTGGCTGCATCACACTGCAGTATGTCTCCAATGTTATAATCCACAACATTCATGTCCACCATTGTGTACCTGCGGGCAACACCTTTGTGCGGTCCAGCCCCACCCATGTGGGTCACAGGGGGAAATCGGATGGTGATGGGATAACCATCTTTGGCGCCAGTAACATCTGGATAGATCACTGCACTCTCTCTTACTGCACTGATGGGTTGATTGATGCTACAATGGGGTCCACTGGGATCACCATTTCCAATAGTCATTTTTCACACCATAATGATGTCATGCTCTTAGGAGATAGTGAGGGCAATGTCTTGGATGCCGGTATGCAGGTGACTTTGGCATTTAATGTGTTTGCGGAGAAAGTAGTACAGAGGATGCCGAGATGTCGAAGAGGATATATACACATAGTGAACAACGATTTTAGATATTGGGAGATATATGTCATTGGAGGGAGCGACAATCCTACTATCAACAGCCAGGGTAATCGGTACATTGCCCCAAATAATCCAAGTATTAAAGAGGTTACAAAGAGAGTGGAAACAGATGACAAGGATTGGCAAGATTGGAACTGGAGGACGGAAGGGGACATTATGGTAAATGGAGCCTTTTTTGTACCTTCAGGGCAGGGTCTAAGTACTGAGTATGCCAAGGCCTTCAGTGTGGAACCTAAATCTGCCGGGCTAATTGACGTGCTTACTCTCCATGCTGGTGTATTTGGTGACCCAAGTGACAGTGTGAACGTTGCATATGGTGTCGGAACCAGCACGGGTGGTGGTAACAGCGCTGGCTCTGGGTCTGGTGGTGATGCAGACTACTTTGGGATGATCTTTGGGAGTGGCAGCGGGAGCAGCAGCAAGAGCGCCCTCTCACCATCCTTCTCTTCACCCCAATTATTGATTATTTTTGCCATTATTATTTCAGTTTTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_2230.p1 GENE.S_Transcript_2230~~S_Transcript_2230.p1 ORF type:complete len:483 (+),score=50.77,Pec_lyase_C|PF00544.15|1.7e-21 S_Transcript_2230:153-1601(+)
MLLRIHVLFSFFFVSLFSPLSPPFVRASSNLILPHQHPDPDAVVEDFHRMVNVSLTRRQMLEMSKSSCLTGNPIDDCWRCDPHWASNRQRLADCGIGFGAAAKGGKGGQIYVVTDSSDSDPVNPKPGTLRYGVVQEEPLWIIFSKDMTIKLRYELIVNNFKTIDGRGANVHITGGGCITLQYVSNVIIHNIHVHHCVPAGNTFVRSSPTHVGHRGKSDGDGITIFGASNIWIDHCTLSYCTDGLIDATMGSTGITISNSHFSHHNDVMLLGDSEGNVLDAGMQVTLAFNVFAEKVVQRMPRCRRGYIHIVNNDFRYWEIYVIGGSDNPTINSQGNRYIAPNNPSIKEVTKRVETDDKDWQDWNWRTEGDIMVNGAFFVPSGQGLSTEYAKAFSVEPKSAGLIDVLTLHAGVFGDPSDSVNVAYGVGTSTGGGNSAGSGSGGDADYFGMIFGSGSGSSSKSALSPSFSSPQLLIIFAIIISVL*

Click here to download the sequence:
Link to NCBI Protein BLAST