Transcript Information: S_Transcript_223022.p1


Annotated TAIR IDAT3G51700.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:19179443-19181145 | Reverse length=344
E-Value2E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2139848226211
Replicate 21.6856121054128
Replicate 31.941340640379
Condition 2: 8 Hour
Replicate 13.7292278483272
Replicate 24.5579318111497
Replicate 32.786621843096
Condition 3: 24 Hour
Replicate 12.2252852452218
Replicate 21.5776167650768
Replicate 31.4559414427402


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_223022.p1 GENE.S_Transcript_223022~~S_Transcript_223022.p1 ORF type:complete len:589 (+),score=86.63,PIF1|PF05970.10|1e-104,AAA_30|PF13604.2|3.3e-08 S_Transcript_223022:846-2612(+)
ATGAAGAGGGGGCTTGTGGAGGCTGATGACGGAATTGATCAATGTCTAAAAGAGGCAGTGCAGTTTCAAATGCCCAGTGCTCTCCAGCAGCTGTTTGCAACCACACTCCTATTTTCGCAGCCTGTTGAACCGAGGTCACTCTGGGGAAAATATTATCAAGTGCTCTCTGAAGATTTTAGCCACATGTATCCTCAAGATGCCAAGAAAGTGGAGTACCTAACATGTGCAGATATAGAACGTCTACTAAAGTCATCAGGTAAATCATTCTTGGACTTTGATTTACCTGAACTTCATAGGATTGTTAAGGATACACATAATGTGGCTTCTTCACGCGATGTCATTGATGCTATTGAGGCTCCGGTTCCACCACATTTCATTGGTCTCTGGAAACAACTTAATTGCAAGCAACAAGAAGCGTACAAAGCCATCATCAATTGCCTTAAACAAAGCAAGGCAGGTGTATTTTTCATTGATGGCCCAGGTGGGACAGGCAAGACATTTCTCTATTGTGCTCTATATGCCAAGGTTCGCATGATGGGAAAAATTGTATTGCCGACAACATCTTCAGGCATAGCTGCTTCAAATATCCCAAGTGGGAGAACAGCACATTCACGATTCAAAATACCTTTAGATAGTAATGATTCTATGATTTGTAGTGTTCCAAAGCAAAGTGATCTTGCTGAGGTTTTAAGGCAAGCGGCACTGATCATCTGGGATGAAGCATCAATGGCAAGTAAGGAAAGTGTAGAAGCTGTTGACCGACTATTACAAGATGTATGCAGCTCCAATGTACCATTTGGTGGGAAAGTAATTGTCTTTAGCGGTGATTTCAGACAAGTGTTGCCTGTGATTCCCAGACGCACACAGCATGAGTTAGTTGAGCATAGTCTTGTCAGCTCCTATTTGTGGCCATTGTTTATCCGATTCACGCTTGCAGAGAACATGCGAGCAAGAGAGGATCCATCTTTCACCGACTTCTTGCTTCGTCTTGGAAATGGAGGTTTCCAAGACACTGAACAAGCAGACATTCTGGTTCCATACAACTTCTTTTCAGTGCTTCCATCTAATGGTGATTGTCTACAACAGCTTATCAATTCAGTCTTCCCAGATTTACATGAACTTGCTGCTCATCCACATGCATTTACGTCGCGAGCAACCCTAACCCTGACAAATGATGAGGTCGATTCTATCAACCAGATGGTGATAGATAAATTCCCAGGCAAAGCATATGTTTATAAGAGTTATGACACTACTGTCGACGATGATTGCAATGCTCATCCTGTTGAATTCCTCAACACTCTGTGCCCAGCAGGAATGAGCCCACACCTTCTAACACTGAAAGTCAATTGCCCGGTGATATTGCTTCGTAATCTCAACCCTTCTGTCGGCCTATGCAATGGAACAAGGCTCATCTGTCGAGACTTCAGAGCTAATCTTATTCTGTGTGAAATAGCAACAGGATATCGTGCTGGAGATTATGTATTTATTCCACGAATCAGTCTAAGGCCCTCATCTTCTGTCACTTATCCATACAGATTTGAGAGGAGACAATATCCGATCAAGTTGTGCTTTGCAATGACAATTAACAAATCACAAGGCCAGACACTGATTGACGTTGCCGTTTATCTACGACGACAATGCTTTTCTCATGGACAGTTGTATGTGGCACTATCACGAGCAAAAAAGGCAAGCAGTGTCAAATTGTTTGTCGAGGAACGAAGCAGAGATAAAGCACAACCAACAACTGTCACCAATTGGATTTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_223022.p1 GENE.S_Transcript_223022~~S_Transcript_223022.p1 ORF type:complete len:589 (+),score=86.63,PIF1|PF05970.10|1e-104,AAA_30|PF13604.2|3.3e-08 S_Transcript_223022:846-2612(+)
MKRGLVEADDGIDQCLKEAVQFQMPSALQQLFATTLLFSQPVEPRSLWGKYYQVLSEDFSHMYPQDAKKVEYLTCADIERLLKSSGKSFLDFDLPELHRIVKDTHNVASSRDVIDAIEAPVPPHFIGLWKQLNCKQQEAYKAIINCLKQSKAGVFFIDGPGGTGKTFLYCALYAKVRMMGKIVLPTTSSGIAASNIPSGRTAHSRFKIPLDSNDSMICSVPKQSDLAEVLRQAALIIWDEASMASKESVEAVDRLLQDVCSSNVPFGGKVIVFSGDFRQVLPVIPRRTQHELVEHSLVSSYLWPLFIRFTLAENMRAREDPSFTDFLLRLGNGGFQDTEQADILVPYNFFSVLPSNGDCLQQLINSVFPDLHELAAHPHAFTSRATLTLTNDEVDSINQMVIDKFPGKAYVYKSYDTTVDDDCNAHPVEFLNTLCPAGMSPHLLTLKVNCPVILLRNLNPSVGLCNGTRLICRDFRANLILCEIATGYRAGDYVFIPRISLRPSSSVTYPYRFERRQYPIKLCFAMTINKSQGQTLIDVAVYLRRQCFSHGQLYVALSRAKKASSVKLFVEERSRDKAQPTTVTNWIC*

Click here to download the sequence:
Link to NCBI Protein BLAST