Transcript Information: S_Transcript_223122.p1


Annotated TAIR IDAT1G19150.1
Annotated Gene Namephotosystem I light harvesting complex gene 6
Annotated Gene Symbol(s)LHCA6, LHCA2*1
Annotation TypeOrtholog
Chromosome Positionchr1:6612806-6613799 | Forward length=270
E-Value3.4E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.2924195540614
Replicate 26.5476665783592
Replicate 37.1391236452647
Condition 2: 8 Hour
Replicate 16.3288255134717
Replicate 29.0930739632437
Replicate 38.3888174445411
Condition 3: 24 Hour
Replicate 14.6508461625136
Replicate 26.5798162641008
Replicate 34.0680716782445


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_223122.p1 GENE.S_Transcript_223122~~S_Transcript_223122.p1 ORF type:5prime_partial len:155 (-),score=30.60,Chloroa_b-bind|PF00504.17|2.2e-23 S_Transcript_223122:432-896(-)
CAATTTGCCCCTCAAAACATGGCTCTTGCTGTGGCTTCCACTGCACTTTCAAGCCTTCCAATTAGAGAAATTACAGGGAAATTTTTTCAAGGAAGGCTGAAAAAATGCATCATTACAAGAGTGAATGCAGGTAAAGAGTTGTCAAGTTTTTGTGAACCATTGCCTCCTGATAGGCCTCTCTGGTTCCCTGGTAGCACACCTCCTGAATGGCTAGATGGCAGTCTTCCAGGCGATTTTGGCTTCGACCCACTTGGATTAGGGTCTGACCCGGAGCTGCTAAGATGGTTTGCACAAGCAGAACTGATGCACAGCAGGTGGGCAATGCTGGCAGTAGCAGGGATCCTAATCCCTGAATGGCTTGAAAGCCTTGGCTTAATTGAAAACTTTGATTGGTACGATGCTGGGTCCCGCGAGTACTTTGCGGACCCCACCACACTATTTGTGGTCCAAAATGGGCTGGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_223122.p1 GENE.S_Transcript_223122~~S_Transcript_223122.p1 ORF type:5prime_partial len:155 (-),score=30.60,Chloroa_b-bind|PF00504.17|2.2e-23 S_Transcript_223122:432-896(-)
QFAPQNMALAVASTALSSLPIREITGKFFQGRLKKCIITRVNAGKELSSFCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPEWLESLGLIENFDWYDAGSREYFADPTTLFVVQNGLG*

Click here to download the sequence:
Link to NCBI Protein BLAST