Transcript Information: S_Transcript_223188.p1


Annotated TAIR IDAT5G12350.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3995789-4000545 | Forward length=1075
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1515240919068
Replicate 20.70006928403653
Replicate 30.51426860233117
Condition 2: 8 Hour
Replicate 11.2098057968373
Replicate 21.505797504597
Replicate 32.0496007312482
Condition 3: 24 Hour
Replicate 10.39908921761662
Replicate 21.0460220727545
Replicate 30.8245668363211


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_223188.p1 GENE.S_Transcript_223188~~S_Transcript_223188.p1 ORF type:complete len:1040 (+),score=208.79,RCC1|PF00415.14|7.2,RCC1|PF00415.14|8.9e-13,RCC1|PF00415.14|7.2e-07,RCC1|PF00415.14|1.8e-11,RCC1|PF00415.14|9e-14,RCC1|PF00415.14|6.4e-06,RCC1|PF00415.14|2.4e-12,BRX|PF08381.7|6.1e-28,RCC1_2|PF13540.2|0.0005,RCC1_2|PF13540.2|1.7e-09,RCC1_2|PF13540.2|0.011,RCC1_2|PF13540.2|0.45,RCC1_2|PF13540.2|1.5,RCC1_2|PF13540.2|6.7e-05,RCC1_2|PF13540.2|2.3e+02,FYVE|PF01363.17|4.1e-14,FYVE|PF01363.17|5.5e+03,BRX_N|PF13713.2|3.2e-12 S_Transcript_223188:194-3313(+)
ATGGGTGATTCACAGAAGTGTGGCCCCGCAGAAAGGGACATTGAACAGGCCGTCACAGCATTGAAGAAAGGGGCAACTCTGCTGAAGTATGGTCGAAGAGGGAAGCCTAAGTTTTGCCCATTTCGACTTTCCAATGATGAATCAGCATTGATGTGGTACTCAGGCAAGGAGGAGAAACAGCTTAAACTCAGTCAAGTTTCTAAAATTATCCCTGGACAGAGAACTGCAATTTTTCAGCGATATCCTCGACCTGAGAAGGAATACCAATCATTTTCACTTATATATAGTGATAGATCTTTGGATTTGATATGTAAGGACAAGGAAGAAGCTGAAGTTTGGTTTGTTGCTCTCAAAGCACTAACTTCCAATGGTGGCTGGCGTAAGTGGAGAAATGAACCAAGAGAGAGCAGTACGTCGATCGAGGGTCCCCCTCCCCGAAGATATCATCAATCGTTTTCATCTTTGGATACTGGGGATGCTCTCTCTCATGTTCCTATTGATAGCCCTCCATCCACTGGACTCGGGAAGGCATTTTCAGACATTATACTGTATACAGCATCCTCCAAAAGCTTTAGTCAGGATGATTCAGCCACCAATTTTGTCAGTTTACCGTCAACCACCAGCGTAGATAACTGCACTAACCGAAGTTCAACTTCTGACAATGTTCGGGTTAGTTTATCAAGTGTGGTAAGCTCATCAAGTCAGGGATCTTGCCATGATGATTTTGATTCCTTGAGTGATATTTTCATTTGGGGAGAAGGCATTGGTGAGGGGATTTTGGGTGGAGGTACCATCAAAGTTCGAGATTCTCTTTATAGCAAATTTGATGCTCTTTTGCCCAAGGCATTGGAATCTAAAGTGGTCCTTGATGTTCATTATATAGCTTGTGGAGTAAGGCATGCAGCATTGCTAACCAAGCAAGGGGAAATCTTTAGTTGGGGGGAGGAGTCTGGAGGCAGGCTTGGTCATGGCATAGAAGTTGATGTTTCCCATCCAAAGCTCGTTGATGGTTTTAGTGGCATGAATGTTGAACAAGTTGCATGTGGAGAATATCATACTTGTGCTGTTACCAGCTCTGGGGATCTTTTCACGTGGGGTGATGGTGCCTGTAATTCCGGTATGCTTGGACTTGGAAGTGATACTGGCCACTGGACTCCGAAAAGGGTATGTGGACCTTTAGATGGTATGCAAGTATCATATGTCTCCTGTGGACCTTGGCATACCGCTGTAGTTGTATCAACTGGTCAACTGTTTACGTTTGGAGATGGGACTTTTGGTGTCCTTGGGCATGGAGATCGCATCAGCTGCACTACTCCAAGAGAAGTAGGTGCTTTAAGAGGACTGCGAACACTGAGGGTGGCTTGTGGTGCTTGGCATACTGCCGCTATAGTTGAGGTCCTGGTAAGCGAAGCTTCAAGTGTTGCTTCCTTTGACAGATCTTTCTTAGCAACAGGGAAGCTCTTTACCTGGGGTGAGGGGGATAAAGGCCAGCTTGGACATGGTGACAAAGTAGCTAGGCTCGTGCCTGAGTGTGTCTCAGTACTAATGGACGTAAGTTTCACCAAGGTAGCTTGTGGATGTGAACTCACAGTAGCTCTCTCATCATCTGGGCGGGTTTATACGATGGGCAATACTATTTATGGACAAGTGGGATGCCCTGAAGCCGATGGAAGTACTCCAGTGTGTGTTGTTGGGGGTAAAATTGGTGACAGTTTCATAGAAGATATTGCCTGTGGTTCTCATCATGTCGCTGCTGTAACTTCTAAAGCAGAACTCTTTACATGGGGAAAGGGTACAAATGGGCAATTAGGTCATGGAGATGTTGACCACAGAAAGGAACCTACTTTGGTTGACTTTGTGAAAGATAAGCAAGTGAGAAGTGTAGTGTGTGGATCCAATTTCACTGCAGTTATTTGCCTTCACAAATGGGTATCTGGGATTGACCAAAATGCATGCACTGGTTGTCACAACCCATTTGGCTTCAGAAGAAAACGTCACAACTGCTACAATTGTGGCCAGGTCTTCTGCAAAGCATGTAGCAGCCGAAAATCTCTTAAAGCCTCTTTAGCTCCAAACATGAATAAGCCTTATCGGGTGTGTGATGATTGCTTCGTCAAGCTGAAGAAAGTCATGGAACCAGGACAAGTACGAATCCCTAGACCTAATAATAAAAATGGTTTGAACAGGTCCAATGAAGCAGCAGAAAAGGAGGCATTAATTCCCAAGTTGGCTGGTTTGACATTTGTGAATTCGCTGAAAAGAACCGACAGCGAACGTTCGAAGAGTGGAAAACTTGGAAAAGTTGAGAGCCCTTTTCCTATTTTAAATGGGAGCTTTCAACATGGAAGTGGTCTCCTCTCAAGTCCTCCAACTCCTCTTTTTGGGGCCTCAAACAAACGTGTTTCAGCCTCTGCTCCTGGTTCCAGGATGGTTTCTCGAGCAGTATCCCCTGTTTCTCAAAGGTGCAGTCCAATTCGATCGTCAGCATTACTAGCTCCTCTCAGTGGTCCTACATCTCCTGAAGTAACTCCTACCTCAAAGTATAGGAATGATAATGTTAGCCTAGAAGTCATTCAACTAAAAGCAGAGGTAGAGAAGCTAGTTGGCAAAAATAAGATGCTTCAAGCTGAACTTGGGAAAACAAGAAAACAACTCAAGGAGGCCAAAGCGCTAGCCGCAGATGAAGCTGAAAAATCTAAAGCTGCCAAGGAAGTCATCAAATCACTGACTGTTCAGTTGAAAGAGATGGCTGAGAAGTCACAAGAAGGACTGCATACAAGCAGCAAAGTGGATTCTCACTCTGGGCAATCTTCCAGCTCTGCAAATGGTGCGTCTCTTGACAAACATTTGACCTGTCTTCTGTCCCCAAGAAGCGAGTCGAACATGAGGACTGTGGATGCCCTATTAACCAATGGCACAAAAGCACAAACTGAGAAGACGGAGTGGGTTGTACAAGACGAGCCAGGAGTCTATATTACTCTATGTTCCTTGCCAGGAGGTGGTAATGAGCTGAAGCGTGTTCGCTTCAGCCGTAAACGTTTTAGTGAGGAACAAGCAGAGAAGTGGTGGGCTGAAAACAGCAATAGAGTCTGCGAACGCCACAATATACGGAGTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_223188.p1 GENE.S_Transcript_223188~~S_Transcript_223188.p1 ORF type:complete len:1040 (+),score=208.79,RCC1|PF00415.14|7.2,RCC1|PF00415.14|8.9e-13,RCC1|PF00415.14|7.2e-07,RCC1|PF00415.14|1.8e-11,RCC1|PF00415.14|9e-14,RCC1|PF00415.14|6.4e-06,RCC1|PF00415.14|2.4e-12,BRX|PF08381.7|6.1e-28,RCC1_2|PF13540.2|0.0005,RCC1_2|PF13540.2|1.7e-09,RCC1_2|PF13540.2|0.011,RCC1_2|PF13540.2|0.45,RCC1_2|PF13540.2|1.5,RCC1_2|PF13540.2|6.7e-05,RCC1_2|PF13540.2|2.3e+02,FYVE|PF01363.17|4.1e-14,FYVE|PF01363.17|5.5e+03,BRX_N|PF13713.2|3.2e-12 S_Transcript_223188:194-3313(+)
MGDSQKCGPAERDIEQAVTALKKGATLLKYGRRGKPKFCPFRLSNDESALMWYSGKEEKQLKLSQVSKIIPGQRTAIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKEEAEVWFVALKALTSNGGWRKWRNEPRESSTSIEGPPPRRYHQSFSSLDTGDALSHVPIDSPPSTGLGKAFSDIILYTASSKSFSQDDSATNFVSLPSTTSVDNCTNRSSTSDNVRVSLSSVVSSSSQGSCHDDFDSLSDIFIWGEGIGEGILGGGTIKVRDSLYSKFDALLPKALESKVVLDVHYIACGVRHAALLTKQGEIFSWGEESGGRLGHGIEVDVSHPKLVDGFSGMNVEQVACGEYHTCAVTSSGDLFTWGDGACNSGMLGLGSDTGHWTPKRVCGPLDGMQVSYVSCGPWHTAVVVSTGQLFTFGDGTFGVLGHGDRISCTTPREVGALRGLRTLRVACGAWHTAAIVEVLVSEASSVASFDRSFLATGKLFTWGEGDKGQLGHGDKVARLVPECVSVLMDVSFTKVACGCELTVALSSSGRVYTMGNTIYGQVGCPEADGSTPVCVVGGKIGDSFIEDIACGSHHVAAVTSKAELFTWGKGTNGQLGHGDVDHRKEPTLVDFVKDKQVRSVVCGSNFTAVICLHKWVSGIDQNACTGCHNPFGFRRKRHNCYNCGQVFCKACSSRKSLKASLAPNMNKPYRVCDDCFVKLKKVMEPGQVRIPRPNNKNGLNRSNEAAEKEALIPKLAGLTFVNSLKRTDSERSKSGKLGKVESPFPILNGSFQHGSGLLSSPPTPLFGASNKRVSASAPGSRMVSRAVSPVSQRCSPIRSSALLAPLSGPTSPEVTPTSKYRNDNVSLEVIQLKAEVEKLVGKNKMLQAELGKTRKQLKEAKALAADEAEKSKAAKEVIKSLTVQLKEMAEKSQEGLHTSSKVDSHSGQSSSSANGASLDKHLTCLLSPRSESNMRTVDALLTNGTKAQTEKTEWVVQDEPGVYITLCSLPGGGNELKRVRFSRKRFSEEQAEKWWAENSNRVCERHNIRSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST