Transcript Information: S_Transcript_223597.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value0.0003
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.34562339266468
Replicate 20.14326486725659
Replicate 32.155644477304
Condition 2: 8 Hour
Replicate 10.13847656050086
Replicate 20.29054348882762
Replicate 30.13841459483754
Condition 3: 24 Hour
Replicate 10
Replicate 20.14716760763862
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_223597.p3 GENE.S_Transcript_223597~~S_Transcript_223597.p3 ORF type:complete len:154 (+),score=12.91,UBN2_3|PF14244.2|1.7e-07 S_Transcript_223597:2782-3243(+)
ATGAGAGTTATTATCGATCCGCACACTATGACTCAAAGTTCTAGAAATTCCACATCAAACTCAACAACCATTCTTTCCTTTCTAGGAATTTCTTCAACCAATTTTACTATTCCAAACATCTCTGTTCGGCTTGAACTTGACAGCCATGACTCTTGGCGGCAAATTGTCAAGCAAGATTTTGAAGCTTTTGAACTCGATCACTTTCTTAGTGAGAATTCAGTCCCTCCTGTTAACATCACTGTGCCAGACAGTGATCCACCCGAAACTCAGCCAAACCCAGATTATACGGTTTGGAAAAAGAAATATCGTTTGGTTTTGTTGTGGCTTAAGTCCACCATATCTCCTCGCATTCTCGGTTATGTATCCCGAGCCAATACCACTCATGAAACATGGACTACACTTGATCAAGTTTTTCAAACTCAAGCACACTCTCGCATTATGTATGTTCGTCATCAATTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_223597.p3 GENE.S_Transcript_223597~~S_Transcript_223597.p3 ORF type:complete len:154 (+),score=12.91,UBN2_3|PF14244.2|1.7e-07 S_Transcript_223597:2782-3243(+)
MRVIIDPHTMTQSSRNSTSNSTTILSFLGISSTNFTIPNISVRLELDSHDSWRQIVKQDFEAFELDHFLSENSVPPVNITVPDSDPPETQPNPDYTVWKKKYRLVLLWLKSTISPRILGYVSRANTTHETWTTLDQVFQTQAHSRIMYVRHQL*

Click here to download the sequence:
Link to NCBI Protein BLAST