Transcript Information: S_Transcript_223886.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value1E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4058225157249
Replicate 21.4406370290674
Replicate 31.1771959202298
Condition 2: 8 Hour
Replicate 11.7679890725136
Replicate 21.8055050259501
Replicate 31.3136692581206
Condition 3: 24 Hour
Replicate 11.5065436890065
Replicate 21.5962772643649
Replicate 31.3508505073907


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_223886.p1 GENE.S_Transcript_223886~~S_Transcript_223886.p1 ORF type:complete len:1363 (+),score=197.48,RVT_1|PF00078.23|1.9e-37,RVT_3|PF13456.2|3.5e-20,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.8e+03,zf-RVT|PF13966.2|7.3e+03,zf-RVT|PF13966.2|1e-17,Exo_endo_phos|PF03372.19|1.4e-07 S_Transcript_223886:200-4288(+)
ATGAGTATCTTGAGCCTTAACTGTCGGGGGCTGGGCAACCCCCGCACAGTGGCTTTGCTCCGTGATTTGGTGCGGAGAGAGGCCCCGTCCATGATATTTCTAAGTGAAACAAAATTAAGTGGACGAGAGTTAGATAGGGTGAAGCTGAAGTTTAGTGATTTTAATGGTTTAAGTGTTGATAGTGCTGGGAGATCAGGTGGGCTAGCTCTATGGTGGCGGAGAGGGATGTCTGTTACTCTTTTGTCTATGTCCTTACACCATATTGACGTACTTGTAGAGGAAGGTTTAGGAGAGGTTGTGTGGCGTTTTACTGGGTTTTATGGGTGGCCGGAGGTTCATAATCGTCACTTGTCTTGGGATCTTCTTGAGTCTTTGGCTAGTGTTAGGAGTGAAGCCTGGTTATGTATGGGTGACTTTAATGAAATTCTTTTCCCGCACGAGATGTCAGGGAGAAATGACAGGGCAAGATGGCAGATGCAAAACTTTCGGGTGGCGATTGATCGATGTGGTTTTCGGGATGTCCGTTATGACGGATACCCGTTTACCTATGATAATGGGAGGGCCGGTGTTGAGAATACCCAATCCAGAATTGACAGGGCCTTAGCCTCAGATAGTTGGTTGGAACTGTTCCCCAGAGCTACACTGATTCATCTTGAACGGGAATGGTCGGACCATGCGCCAATAAAACTTGTGGTGGATAGAGGGGCCCCGAGACGACGAAAGAATAAACTCTTTAGGTTCGAGCAGCTGTGGACTGAGCATGAAAAATGTGAAGACACAATTAAGAAGGGTTGGAGTGCTGGCGGTGGGGGGGCGATGAGAAGGGTGAAACAATGTGCAGAGGTGCTGGAGGAGTGGAGTGCAGCTGAGTTTAGGGCCATTTTCCGTAGATTAAAGCAGATTAGAAGGAGAATCTCCAAGCTTAATGGTGCAAACTTATCTAGGGCCCAAATTGAGGAGAGGAAACGGCTTGTAGGTGAATTGGAGAAATATGTACGAGAGGAGGAGGCTTACTGGCGTCAGCGGTCCCGTATTTTGTGGCTCCATACAGGGGATAGGAATACTTCCTTCTTTCATAGACAGGCTTCAAATAGGAAAGCTAAAAATTCTATCACAAAATTAAAAGAGGAAGGGGGAAGGCTGTGTTCTGGTGAAGGTGAAGTGTGTCAAGAGGCAACTAGATATTTGTCGACACTTTTCAGCTCGGATGAGGGACCCACATCTCATGAGGCTCTTCTCGGTTTGGAGGAACGAGTTACTGCGGACATGAACTCAAAGCTGCGCAAACCCTATACAAAGGAGGAGATCAAGGTGGCTCTTGGACAAATGCATCCGCTCAAGGCCCCTGGACCCGACGGTATGTGTCCTTTATTTTTTCAAATGTACTGGCATATTGTTGGTGACGAGGTTAATGACCTTGTGTTGGATTTCCTTAATAATGGAATTATGCCTGATGATCTTAACAATACCTTTCTTGTGTTAATCCCCAAGAAGAAAAACCCAGAAGTTATGACTGATTTTCGACCTATTAGTTTGTGTAATGTCATGTATAAGTTGATTTCGAAGGTTCTAGCTAATAGACTCAAATGTTTCCTATCGGATATAGTCTCCTTGAATCAAAGTGCTTTTACCCCTGGAAGATTGGTCACAGATAACATTCTTACAGCTTTTGAGACTTTTCATTATATGAAGTCTGAGAGGTCTAAAGAAGGTTATGCGGCGCTTAAATTGGACATGGCAAAAGCTTATGATAGAGTGGAATGGGACTTTCTGGAGCAGGTGCTTATCAGGATGGGTTTTGATGATTTGTGGACTAATCGAGTTATGATGTGTGTGAGATCGGTTTCTTTTTCTGTGCTTATTAATGGTACCCCAACAGAGTGTTTCCGACCTAAAAGGGGCCTCCGTCAAGGGGATCCGATTTCACCTTACCTTTTCCTTCTTGTCACTGAAGCATTGTCAGGTTTGTTTAGAAGAGCGGAGTTGCAGGGAGATCTTCATGGTGTTCGTATTTGCCCGGGTGCCCCAACAACTACACACCTTTTCTTCGCAGACGACAGCCTTCTTTTCTTCAAGGCTTCCCCATCTCAAGCTCATGCTATAAAGGCAATCCTTGGTATCTATGAGAAGGCTTCTGGTCAAAAAGTCAATTTTGCTAAGTCACAAATGTGGTTTAGTAATAGTGTGCGGGATAGTACGAGGACTGCTATTCTCCAGTATTTGAATGTCGAGGTGGTCCAGCAGTTTGATCGCTATCTAGGCCTCCCTCCAATGTTGGGTAGATCAAAGAAGAGCCTTTGTAGCCCTTTAAAGGATCGATTGTGGAAGAAGCTCCAAGGGTGGAAGGGGATGTTGTTGTCAAAAGCTGGTAGGGAGGTAATGATTAAGGCAGTGGCCCAAGCTCTTTCTACCTACGCGATGAGTATTTTTAAACTACCAACATCCTTTTGCAAGGAGGTGACCTCTATGGTGACTAATTTTTTCTGGGGACAGAGAAAGGAGGAGAGGAGGATTCATTGGCGTTCTTGGAAAAATTTGTGCAGGACCAAAATTAGGGGTGGGTTGGGTTTCCGTGATTTGAAGATGTTTAATTGGGCTTTATTGGGCAAGCAGGCATGGAGGCTGGCTCGGGGAGAGGGCGGACTGTTGGAACAAATTTTCAGAGCGAGGTATTATCCACAAGGGACTTTCCTCTCTAGTTCGCTGGGGGCACATCCTAGTTATACCTGGAGGTGTATATGGGAGGCTCGGTGGGTTGTGCTGAAAGGTATGCGTTGGCGTGTTGGGAATGGCCAGCAAATAAAAGTCTGGGGTGATGCTTGGCTGGATGGCAGCGGTTCGGGGAAAGTTATTAGCCCTCGAGGTGCTCATGCTCAGGATATGCGTGTCTCAGAGCTTTTGTGTGGAGTGACTGGTGAATGGGATATGGACAAAGTGCGAGATACTTTTCTTCATTTTGAGGTATCTCGGATTGCGTCTATACCTCTTAGCCCAAGGCTTCCCCCTGATTCTATTTACTGGAACTGGGATAAGAATGGACGTTATTCGGTGCGTAGTGCTTACCATGGGATAATGGCAGCGGCTGAGTCGAGTATGGAGGAGTCTTCCTCTCGCGAGAGTAATGGTTTGTGGGCTAAGCTATGGAGTGTGCAGGTACTTCCCCGAATTAAAATGTTCATGTGGCAAATGTGTCAAGAGAGATTACCTACTAAGGAGGGTCTACATAGAAGGGTGGCTTCAATTGACTCGACGTGTGGGGTGTGCAGACAGTCAAGCGAGGACACTCTTCATGCAGTTCGAGACTGTCCAAGAGCAACAGATGTTTGGACTAGCAGTGGGTTGGACGTGTTTTGTGGCACCCCTTTCCGATCAGTGCGTGATTGGGTGGAACGTGTGCAGGTTTTCTCACAGGGGCGTGAGCTAGAAATGTTTTGTTGTATTGCGTGGGCCATCTGGAATGGGAGGAATGCCTGCATTTTTCAAGGTGAAATGGAGCATGCTGGGGACATCTTATCTCGGGCCCTTCGAGTATGTGAAGAAGCTCAAAGTGATGCAGGGGACAGGGGGATTGCAAGAGTTGCTAGGCGGGATAAGTGGATGGCCCCTGGAAGTGGGGTGTGGAAAATTAATGTGGATGCTGGCTGTTTGGTGGGGTTCGGTGTTAGTGTCGGCATTATTTGCAGAAATGAGCGGGGACGTCCTATAGTTGGGGCAACTCACAATATTGAGGTGGAGTGGGATGCTCGATTAGCTGAAGCACAGGGAGTTCTTAAAGGGCTGCAGCTGGCATATGCGGTTGGCGGCACAAATATTATCCTTGAAACTGATTGTTTAAGTGTTTACTCTGCTCTTATGTCAAATAGCAAAGGCCTGTCTATCTTTGATCTGGTGTTAGACGATATTAGAGACTTTAGCTCAGTCTTTTCCAGTGTGTCGTGGTCTTTTGTTAATAGGGAAGGGAATAAAGTCGCCCATGAACTAGCGCATGTGTTTCCATGGGAAATTGGCGTTCGGATGTGGGATGTTTTTTTTCCCGCGAATGTTGTGTCTGTGTTGAATTCTGATTTTACAATTATGAATGAAAGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_223886.p1 GENE.S_Transcript_223886~~S_Transcript_223886.p1 ORF type:complete len:1363 (+),score=197.48,RVT_1|PF00078.23|1.9e-37,RVT_3|PF13456.2|3.5e-20,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.8e+03,zf-RVT|PF13966.2|7.3e+03,zf-RVT|PF13966.2|1e-17,Exo_endo_phos|PF03372.19|1.4e-07 S_Transcript_223886:200-4288(+)
MSILSLNCRGLGNPRTVALLRDLVRREAPSMIFLSETKLSGRELDRVKLKFSDFNGLSVDSAGRSGGLALWWRRGMSVTLLSMSLHHIDVLVEEGLGEVVWRFTGFYGWPEVHNRHLSWDLLESLASVRSEAWLCMGDFNEILFPHEMSGRNDRARWQMQNFRVAIDRCGFRDVRYDGYPFTYDNGRAGVENTQSRIDRALASDSWLELFPRATLIHLEREWSDHAPIKLVVDRGAPRRRKNKLFRFEQLWTEHEKCEDTIKKGWSAGGGGAMRRVKQCAEVLEEWSAAEFRAIFRRLKQIRRRISKLNGANLSRAQIEERKRLVGELEKYVREEEAYWRQRSRILWLHTGDRNTSFFHRQASNRKAKNSITKLKEEGGRLCSGEGEVCQEATRYLSTLFSSDEGPTSHEALLGLEERVTADMNSKLRKPYTKEEIKVALGQMHPLKAPGPDGMCPLFFQMYWHIVGDEVNDLVLDFLNNGIMPDDLNNTFLVLIPKKKNPEVMTDFRPISLCNVMYKLISKVLANRLKCFLSDIVSLNQSAFTPGRLVTDNILTAFETFHYMKSERSKEGYAALKLDMAKAYDRVEWDFLEQVLIRMGFDDLWTNRVMMCVRSVSFSVLINGTPTECFRPKRGLRQGDPISPYLFLLVTEALSGLFRRAELQGDLHGVRICPGAPTTTHLFFADDSLLFFKASPSQAHAIKAILGIYEKASGQKVNFAKSQMWFSNSVRDSTRTAILQYLNVEVVQQFDRYLGLPPMLGRSKKSLCSPLKDRLWKKLQGWKGMLLSKAGREVMIKAVAQALSTYAMSIFKLPTSFCKEVTSMVTNFFWGQRKEERRIHWRSWKNLCRTKIRGGLGFRDLKMFNWALLGKQAWRLARGEGGLLEQIFRARYYPQGTFLSSSLGAHPSYTWRCIWEARWVVLKGMRWRVGNGQQIKVWGDAWLDGSGSGKVISPRGAHAQDMRVSELLCGVTGEWDMDKVRDTFLHFEVSRIASIPLSPRLPPDSIYWNWDKNGRYSVRSAYHGIMAAAESSMEESSSRESNGLWAKLWSVQVLPRIKMFMWQMCQERLPTKEGLHRRVASIDSTCGVCRQSSEDTLHAVRDCPRATDVWTSSGLDVFCGTPFRSVRDWVERVQVFSQGRELEMFCCIAWAIWNGRNACIFQGEMEHAGDILSRALRVCEEAQSDAGDRGIARVARRDKWMAPGSGVWKINVDAGCLVGFGVSVGIICRNERGRPIVGATHNIEVEWDARLAEAQGVLKGLQLAYAVGGTNIILETDCLSVYSALMSNSKGLSIFDLVLDDIRDFSSVFSSVSWSFVNREGNKVAHELAHVFPWEIGVRMWDVFFPANVVSVLNSDFTIMNES*

Click here to download the sequence:
Link to NCBI Protein BLAST